Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2448 ATGGCGTCTTTCACTTGCTCTGCACCTTCACTTGTTGGGAAGAAAAAGGTTCTTTTCATAATGGGTGCAACGGGCACGGGCAAAACCAAGTTATCCATCAACTTGGGCACTCAATTCCCTTCTGAAGTCATTAACTCTGACAAAATTCAAGTCTATAAGGGCTTGGACATCATCACAAACAAGGTACCAGAGTCTGAACGTAATGGCATTCCCCATCATTTGCTAGGCATCATCGATGATCCTGATTATGACTTCACAATTGATGACTTTTGCAAGCATGTCCTCATTGCTCTCGACCTCATCATTGAAAATGGACACCTACCTATTATCGTGGGAGGCTCAAACACTTACCTTGCAACATTGCTTGAGGATCCCAACATCGCATTTCATTCCAAATACGATTGTTGCTTCATTTGGGTCGATGTGTCTTTACCTGTGTTGTTTCAGTATTTAGATAAAAGGGTGGACGAAATGCTTGATGAAGGAGTTGTTGATGAGATTCGAGAAGCTTTTGTACCTGGAGCAGACTACTCTCGTGGGGTTAGAAGAGCCATCGGAGTTCCTGAGCTGGGAGAGTATTTCCTTGTTGAGAAGGAAATTAGTGATGAGGCTGAAAAGGAGAAGATGTTACAACGTGCTATTGCTAGAACCAAAAAGAACACTTGTAAGTTGGCTGAGATGCAACTCTTAAAGATCCATAGGATGAATTATGAGCTTGGATGGGGAATGACCAAAATTGATTCAACACAAGTGTTTGAGGCTATTTTAAAAGGAGTTGATTATAAGCACCTGTACCAAGAAATTGTGTTCAAACCAAGCATGGAGATAGTGAAAAGATTCCTACAGGAGACAACTCAGATGTGGGGAAAGACTCCATGTCAGAATGGCGAACAAGCGACGATTTGTGCTTAA 912 0.42 MASFTCSAPSLVGKKKVLFIMGATGTGKTKLSINLGTQFPSEVINSDKIQVYKGLDIITNKVPESERNGIPHHLLGIIDDPDYDFTIDDFCKHVLIALDLIIENGHLPIIVGGSNTYLATLLEDPNIAFHSKYDCCFIWVDVSLPVLFQYLDKRVDEMLDEGVVDEIREAFVPGADYSRGVRRAIGVPELGEYFLVEKEISDEAEKEKMLQRAIARTKKNTCKLAEMQLLKIHRMNYELGWGMTKIDSTQVFEAILKGVDYKHLYQEIVFKPSMEIVKRFLQETTQMWGKTPCQNGEQATICA* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2448 303 Gene3D - 14 281 IPR027417 -
Gso18g2448 303 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 11 294 IPR039657 -
Gso18g2448 303 Pfam IPP transferase 50 124 - -
Gso18g2448 303 Pfam IPP transferase 131 229 - -
Gso18g2448 303 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 11 294 - -
Gso18g2448 303 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 144 243 - -
Gso18g2448 303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 173 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2448 Gso-Chr18 57174638 57177614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2448 98 292 C2H2 Transcription Factor Family AT2G27760 31.222 2.12e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2448 K10760 - gmx:121173984 600.897