Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2446 ATGCGGATGAGCTGCAATGGATGTCGAGTTCTCAGAAAAGGTTGCAGTGAAAATTGCAGCATCAGACCCTGTTTACAATGGATCAAAAGCCCAGAATCTCAAGCCAATGCTACTGTGTTTCTTGCCAAGTTCTACGGCCGTGCTGGTCTAATGAACCTGGTTAACGCAGGCCCCGAACATCTTCGTCCAGCGATCTTTCGTTCGTTGTTGTACGAGGCATGCGGTCGGATATTGAACCCGATTTACGGGTCTGTCGGGTTGTTATGGTCCGGGAGCTGGCAGCTATGTCAAGCCGCCGTGGAAAACGTCTTGAAAGGCGCACCGATTACGCCGATCACGTCCGAAGCCGCGGCTAGCGGGCGGGGCCCACCGCTCAAGGCTTACGACATACGCCACGTGTCCAAAGACGAGAACTCCGCCGCCGCGTCCAACGAAACTCAGCACCAACGAGTCAAGACTCGGTCTCGAGTGAAGCGACCCCTCGCCAACAACAACGCCAAGCCCAAATCCACCACCAACGAAAACAACAACAATAAGGGAACCGAATTGGGTTCAGCTGAACCGAGTTTGGTGGCATGCGAGTGGACCGAAGAGGTGATGAACCGGTCTGGAAGTCACGATTCGACGCTGAGCCACCAGTCGGAGGCGGCGAATGCGGTGGAGAGCGAGAGCATGCTGTCGGCGGAGACGCCGGAGACTTCGATTCTCTTCCGAGAAGAACCGGAAACGAACCCGAAGCGTGTGAGCGATGATGTTGGTTTAGAGCTTACGCTTGGGTTCGAACCGGTTTCACGTGCGCGGCCCGTGGTTCCGGTGAAGAAAAGAAGGATTGAGTTGAAAAATTTTAGTGGCTCGGCTGAGAGTGGCTCGTGCAAGATGGAGCTGGGGCTTGAATGTTCGGCTTGA 906 0.5497 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRILNPIYGSVGLLWSGSWQLCQAAVENVLKGAPITPITSEAAASGRGPPLKAYDIRHVSKDENSAAASNETQHQRVKTRSRVKRPLANNNAKPKSTTNENNNNKGTELGSAEPSLVACEWTEEVMNRSGSHDSTLSHQSEAANAVESESMLSAETPETSILFREEPETNPKRVSDDVGLELTLGFEPVSRARPVVPVKKRRIELKNFSGSAESGSCKMELGLECSA* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2446 301 MobiDBLite consensus disorder prediction 201 248 - -
Gso18g2446 301 MobiDBLite consensus disorder prediction 202 231 - -
Gso18g2446 301 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Gso18g2446 301 PIRSF AS2 1 301 IPR017414 -
Gso18g2446 301 MobiDBLite consensus disorder prediction 158 184 - -
Gso18g2446 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 298 - -
Gso18g2446 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 298 - -
Gso18g2446 301 MobiDBLite consensus disorder prediction 136 187 - -
Gso18g2446 301 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2446 Gso-Chr18 57133079 57134526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2446 1 297 AS2 family AT3G02550 56.566 2.46e-108 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso18g2446 LOB 3.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2446 - - gmx:100807854 597.045