Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2427 ATGGCTTCCCTGCTTATTCACCTCCCTCCTATCCCTATTCTTCAACACTTTATCCTCCTCCTCATACTGATTCAGACACCTCCATATTTAAGCTCCTACAATGATGATAGGGGTTGTACTAATCAGCTGATAAGTTGTGGGAATATAAAAAACATTGGTTTTCCATTCTGGGGAGAAAAACGACCAAGAGATTGTGGCCACCCTCGGATGCAACTCCGCTGCGAACAAGAGATCACCTACATAACCATTAATGATTTCAGGTACAAGGTTTTGGAGGTAAACCCAGATAACCATACTTTGAGAATCACTACAGAGGACTACTTGGAAAACATATGCCAACCAAAGTTTGTCAACACCAGCCTTGACACTGAGCTCTATGTTCATGACTCAGCCTATAAGAATCTTACCCTTTTCTATTGTGCTAATGATTTGCCTTCCACCACTGGATTTCTGCCTAGTTGTGTCCCAAATGGCAATTATGTTTATCCTCGATTTGAGCCTCTGCCTCCTTCTAATTATAATGCCTTTTGCAAAACAGTGGTTGTTCCAGTTCCTCCGTCCTTAGTTGATACTAGTGATGTTGACAAAATACTCAATGCAATCGTAGACGGATTTGTGGTGAGATGGATAGTGGGCATTGGAGAATGTGAGAAGTGTATGATATCAGCAGGTAGATGCGGCGGTATTGAATGGTATCCAAATCAAACATGTTACTGCAGAGATGGACCTTGTTCTAATTTCTTACCAGATGACAAAGCACCACAGTCCCCACCTACAGGTAGCAGCAAAGTAGGTGTTGCAATAGGCGCTAGTATAGGAGCAGTTGTAGCCCTTGTTGTCATTCTTGGATGTGTGTACTTTGTGATGCAAAGAAGGAGAAAAACTGCTTATAATAAACAAAGAAGCATGGAACTGTTCATTGCTCCTTCAAGCGGAGACACTTTTGCATCTACAACTAACACGTCTCAAAGTCTATCTTCTTACCAATCCTCCAACACTGATCCAATGCCGCCGAGGAGTTACTACTTTGGCGTCCAGGTCTTTACCTATGAGGAACTAGAGGAAGCTACCAAAAACTTTGACTCTTCAAGAGAACTTGGTGAGGGAGGTTTTGGCACTGTTTACAAAGGTCAACTCAAAGATGGACGTGTAGTTGCAGTGAAACGTCATTATGAAAGCAACTCTAGACGTATTGAGCAGTTCATGAATGAAGTTCAGATTCTAGCACGGTTAAGGCACAAGAGCCTGGTGACACTCTTTGGATGCACCTCTAGACATAGCAGAGAGCTTCTCCTTGTGTATGAATTCATACCCAATGGAACAGTGGCTGATCATCTTCAAGGAAGGAGCTCAAACTCAACTAATTTACTCCCTTGGCCTGTAAGATTGAACATTGCAGTTGAAACAGCTGAGGCTCTAGCCTACCTACATGCTAATGATGTCATACACCGCGATGTTAAAACCAACAACATTCTCCTGGATGATAACTTCCGTGTCAAGGTTGCTGATTTCGGTCTCTCAAGGGATTTCCCAAACCATGTCACTCATGTGTCAACAGCTCCACAGGGAACACCAGGTTATGTTGACCCTGAGTACTATCAGTGCTACCAACTCACTGATAAGAGTGATGTTTATAGCTTTGGAGTGGTCTTAGTTGAGCTGATATCATCATTGCAAGCTGTGGACATCAACAGGAACCGCAGTGATGTGAACTTGGCAAACATGGCTATCAATAAAATTCAGAACCAGGAACTGCATGAGTTGGTTGATCCTTATCTTGGATTTGAGAGGGATTATGCTATAAGGAGGATGACAACAGGGGTGGCAGAATTGGCCTTTAGGTGTTTGCAGCAGGAAAGAGAGATCAGACCCTCCATGAATGAGGTGGTGGAGATCTTGAGAGGAATCAAGAGTGACGATGGGCTTGGTGCAAGGGAAGAGACAGAAGTATTGGAAGTTAGGATAGATGAAGCTAGACTTCTGAAGAAGGTTTCCCCGGTTTCACCAGATTCAGTTGTTGATAAATGCTTTAGCGGCTCCTCTGTATCTAATTCCTCATAG 2061 0.4323 MASLLIHLPPIPILQHFILLLILIQTPPYLSSYNDDRGCTNQLISCGNIKNIGFPFWGEKRPRDCGHPRMQLRCEQEITYITINDFRYKVLEVNPDNHTLRITTEDYLENICQPKFVNTSLDTELYVHDSAYKNLTLFYCANDLPSTTGFLPSCVPNGNYVYPRFEPLPPSNYNAFCKTVVVPVPPSLVDTSDVDKILNAIVDGFVVRWIVGIGECEKCMISAGRCGGIEWYPNQTCYCRDGPCSNFLPDDKAPQSPPTGSSKVGVAIGASIGAVVALVVILGCVYFVMQRRRKTAYNKQRSMELFIAPSSGDTFASTTNTSQSLSSYQSSNTDPMPPRSYYFGVQVFTYEELEEATKNFDSSRELGEGGFGTVYKGQLKDGRVVAVKRHYESNSRRIEQFMNEVQILARLRHKSLVTLFGCTSRHSRELLLVYEFIPNGTVADHLQGRSSNSTNLLPWPVRLNIAVETAEALAYLHANDVIHRDVKTNNILLDDNFRVKVADFGLSRDFPNHVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLVELISSLQAVDINRNRSDVNLANMAINKIQNQELHELVDPYLGFERDYAIRRMTTGVAELAFRCLQQEREIRPSMNEVVEILRGIKSDDGLGAREETEVLEVRIDEARLLKKVSPVSPDSVVDKCFSGSSVSNSS* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2427 686 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 13 686 - -
Gso18g2427 686 Gene3D Transferase(Phosphotransferase) domain 1 437 658 - -
Gso18g2427 686 ProSitePatterns Protein kinases ATP-binding region signature. 366 388 IPR017441 GO:0005524
Gso18g2427 686 Pfam Protein tyrosine and serine/threonine kinase 363 633 IPR001245 GO:0004672|GO:0006468
Gso18g2427 686 SUPERFAMILY Protein kinase-like (PK-like) 339 637 IPR011009 -
Gso18g2427 686 Gene3D Phosphorylase Kinase; domain 1 335 436 - -
Gso18g2427 686 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 686 IPR044652 -
Gso18g2427 686 ProSiteProfiles Protein kinase domain profile. 360 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2427 686 SMART serkin_6 360 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2427 686 Pfam Wall-associated receptor kinase C-terminal 173 242 IPR032872 -
Gso18g2427 686 Pfam Wall-associated receptor kinase galacturonan-binding 39 103 IPR025287 GO:0030247
Gso18g2427 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2427 Gso-Chr18 56948508 56960674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2427 38 686 Receptor kinase-like Gene Family AT1G25390 42.665 6.43e-151 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gso18g2427 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2427 - - gmx:100811407 900.582