Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2426 ATGAAACAACTGCTTCTTGAGCCTTGTTTCATCTTCATTTTGTTGGTAATCTCAGTTACCAACACTCCAACTTGTCTTTGCGTGGATGATGCTCGCTACACCAACTGTAGTAACGCTTTTAGCTGCGGAAATAACAACTTCAACCTCAAATACCCATTCTGGGGAGAAAACAGAGATAACCATTGTGGTGGACCTAACTCGGAGTCGGAGAAACTCACATGTGAAGCTCAAGTCCCCAAGATAACCATCAATTTCATCAAATACCGTGTTCTTGGCTGGGAAAACACATCACAGATACTCAAAGTCGCAAGGGACAATTATTGGGACAATAATGTCTGTGTCAATGGTGACAGGAACAGCACATTTGATAACACTCCGTTTCAATATGATTATGATGGCCTTGTTAACGTTACGCTCTTTTATGATTGCCCTGCCAGTTCTTCACCTCCCACTATTTCATCGCTTCCAGCATCGTCTGTGCTTACTTTTCCCTGTGGTGGTGCTGTCTACTACACTGTCCAACCTTTACCTTCTTCGTACGAGTCGCCCTGCAATATTGTTGTGATTCCAATCTTTAACGATTCACTTTACACTCCGGATAGAATCATTGAAGCTTTACAGGGAGGTTTTCAGATTGAATGGACGGGAAATTATGACAAGTGCGAGAAATGCACTGGTTCTGGTGGAGAGTGTGGATCCGTTGATGGAAATTTCCAATGTTTCTGCAAGGATGGACCTCATTCTGCTTCATGCAAAGAAAAAAGTAAAGTCCAGTTGCCAACAATGATCTTTATTATTGTACCCACGATTATTTCAGTAGCACTATTCTTTTTTTGCTACTACATGGTAAAGAGAAAATCAAGCCTGGACCATTTCCGCTTTCCAAAATATTGGGTGTTCACACCAAAAAAGAGTATCAAGAGTGTTCTTAAAGAAAATTTTGGAAATGAAAGTGCCACATTAGAGCCCTTGCAATTCAATCTGTCTATACTTAAAGCCGCAACCAATAATTTTTCAGATGAGAATAGGATTGGCAAAGGTGGATTTGGAGAAGTTTATAAGGGAATTCTTCATGATGGGCGACAAATTGCAATAAAAAAACTTTCAAAAAGTTCTATGCAAGGTTCCAATGAGTTCAAGAATGAAGTTTTAGTGATAGCCAAGCTTCAACATAGAAATCTTGTGACACTTATTGGGTTTTGTCTTGAAGAACAAAATAAAATACTTATATACAAATATGTGCCAAACAAGAGTCTTGACTATTTTTTATTTGATTCTCAACGGCCAAAGTTAAGCTGGTTTCAACGTTATAATATTATAGGAGGAATTGCTCAAGGAATTCTTTATTTGCATGAATTTTCTACACTTAAAGTTATACATCGTGATCTTAAACCTAGTAATATTTTATTAGATGAAAATATGGTTCCAAAAATATCAGACTTTGGTCTAGCTAGAATTATTGAAATAAATCAAGATCAAGGGGGTACAAATAGAATCGTTGGAACATTTGGATATATGCCTCCGGAATATGCAATGTTTGGACAATTTTCAGATAAATTAGATGTTTTTAGTTTTGGAGTCATGATTCTTGAGATTATTACTGGAAAAAAGAATTTGAGTTCTTACGAACCACATCGTGTTGCTGATGGCCTTTTGAGTTATGTTTGGAGACAATGGAGGGAAGAAACGTTGTTAGGCGTATTAGACTCAAGTATTAAAGACAATTATTCGGAGATCGAAGTTATTAGGTGCATTCACATTGGTTTATTATGTGTTCAACAAAATCCAGATGTTAGACCTACAATGGCAACAATTGTTTCGTATCTTAGTAGTTATTTAATTGATTTGCCGACTCCTCAAGAACCTGCATTTTTCTTGCATGAAAGAATTGATCCAATATCATTGGCACAAGAATCAGGTTGCAATCAATCTGCCAATAGGTCTATCCCATTCTCTGTTAATAAAATGTCTATAAGTGATTTTATTCCTCGATAG 1995 0.3694 MKQLLLEPCFIFILLVISVTNTPTCLCVDDARYTNCSNAFSCGNNNFNLKYPFWGENRDNHCGGPNSESEKLTCEAQVPKITINFIKYRVLGWENTSQILKVARDNYWDNNVCVNGDRNSTFDNTPFQYDYDGLVNVTLFYDCPASSSPPTISSLPASSVLTFPCGGAVYYTVQPLPSSYESPCNIVVIPIFNDSLYTPDRIIEALQGGFQIEWTGNYDKCEKCTGSGGECGSVDGNFQCFCKDGPHSASCKEKSKVQLPTMIFIIVPTIISVALFFFCYYMVKRKSSLDHFRFPKYWVFTPKKSIKSVLKENFGNESATLEPLQFNLSILKAATNNFSDENRIGKGGFGEVYKGILHDGRQIAIKKLSKSSMQGSNEFKNEVLVIAKLQHRNLVTLIGFCLEEQNKILIYKYVPNKSLDYFLFDSQRPKLSWFQRYNIIGGIAQGILYLHEFSTLKVIHRDLKPSNILLDENMVPKISDFGLARIIEINQDQGGTNRIVGTFGYMPPEYAMFGQFSDKLDVFSFGVMILEIITGKKNLSSYEPHRVADGLLSYVWRQWREETLLGVLDSSIKDNYSEIEVIRCIHIGLLCVQQNPDVRPTMATIVSYLSSYLIDLPTPQEPAFFLHERIDPISLAQESGCNQSANRSIPFSVNKMSISDFIPR* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2426 664 CDD STKc_IRAK 344 609 - -
Gso18g2426 664 ProSiteProfiles Protein kinase domain profile. 338 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2426 664 Pfam Wall-associated receptor kinase C-terminal 184 245 IPR032872 -
Gso18g2426 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Gso18g2426 664 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 240 655 - -
Gso18g2426 664 ProSitePatterns Protein kinases ATP-binding region signature. 344 367 IPR017441 GO:0005524
Gso18g2426 664 SMART serkin_6 338 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2426 664 Gene3D Phosphorylase Kinase; domain 1 302 413 - -
Gso18g2426 664 SUPERFAMILY Protein kinase-like (PK-like) 321 630 IPR011009 -
Gso18g2426 664 Pfam Protein kinase domain 339 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2426 664 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 240 655 - -
Gso18g2426 664 Gene3D Transferase(Phosphotransferase) domain 1 414 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2426 Gso-Chr18 56938503 56946414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2426 303 664 Receptor kinase-like Gene Family AT4G11480 50.959 2.44e-127 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso18g2426 Pkinase 5.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2426 - - gmx:100810864 1276.54