Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2414 ATGGATTCACAAACCCTAGACTCCACCAAACTCTACCTCACCGCCCTCAAAACCCTCCAATCCGAAGCCCCTCCCACACCCTCCCTCCCCCCACTCCCCTCTTCCATCCCTCACTCCAAACTCATCCCCCACACCCGCTTCCTCGTCGACGCCTTCCGCCACGCCGGCCCCCACTCCCACTCCTACTTCCTCTCCCACTTCCATTCCGACCACTACTCCGGCCTCTCCCCCTCCTGGTCCCGCGGCGTCATCTTCTGCTCCCACACCACCGCCGCCCTCCTCCGCCGCATTCTTCACATCCCCGCCGCATTCATCGTCCCCCTCCCCCTCCGGCAGCCTCTCCGCATCGACGGCGCCCATGTCACCCTCCTCGACGCCAACCACTGCCCCGGCGCCGTCCAGTTCCTCTTCTCCGTCCCCCGTGCCACCGCCGATGCCGCCGCCCTCAGGTACGTCCACACCGGCGATTTTCGCTTTTGTAATTCCATGGTTTCCGAACCCGCCCTCGCCCCCTTCGTCGGTGCCGATGCGGTGTTTCTCGACACCACCTATTGTAATCCTAAGTTCGTGTTCCCCTCGCAAGAGGAGTCTATTGATTACGTTGCCAGTGTCGTGGAGAGCGTTGAGCGTGAGTGTGAGCATAATAGTAGTGACAAAGTTTTGTTTCTTGTTGCTACTTATGTCATTGGGAAGGAGAAGATTTTGCTTGAGCTTGCACGCAGGTTTAAGAGGAAGATACACGTCGATGCTAGGAAGATGGAGGTTTTGAGGGTTCTTGGGTATGGGGAGAATGGTGAATTTACTGAGGATGGGAAGGAGAGTAATATTCATGTTGTTGGGTGGAATTTGTTGGGGGAGACTTGGCCTTACTTTAGGCCTAATTTTGTTAGGATGAAGGAGGTTATGGCTGAGAGAGGGGGGTCATACTCCAAGGTTGTCGGCTTTGTTCCGACCGGATGGACCTATGAAGTGAAGCGGAATAGGTTTGCGGTCAAGTCCAAGGATTTGTTCAAGATTCATCTTGTGCCGTATAGTGAGCACTCAAACTATGATGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCAAAGCGGGTTGTTCCGACCGTGGGTTTGGATGTTGAGAAGAGTGACAGTAAACATGCTGACAAAATGAGGAAGTACTTTGCTAGGTTGGTTGATGAGACTGCCAACAAGCAGGATTTTTTAAGGGGTTTTCTTCGTGACCCTGGTGAGAAGGGTGAAGCGGGTTTCAAGGCTGAGAAGGTTGTTAGTGATGCTCTTGGACCAGGGCAAGACATGGAGGAAGAAGAAATCAATGCATTGAAGAAGACAGAAGGTGATATGGGTATTGGTCCAGTTGTGGCTGTGGGTTTGTCTTCTTTTATGGAAGAAACTTATGCACAAGATCCTACTTTGCTGAATGATGAAGAAAAGGAGAAAATAATTCAAGAACTGACTTTTTGTTTGCCCACATGGGTCACCCGAAACCAGTTGTTGGATCTGATCAGCATCTCAGGGAGCAATGTCATTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCATGAGCAAGTGATATCTTGTCAAACTCCTGTTTCAACATCCAAGTGCTGCTCATTAAATGGTATGGATTCACTTGCAAAACCATGCCTCAATACAAACAACACTGGCAAAAATATTGACATTTTTCCAAGTCAAGACTCTAAATTAACTAACCTGAGGCATACAGTGCCTAGTCCCATTTCTCCTGCCAAAAGGAAGAGAAGTACTGACAGTAAGCAAAACAAAAAAGCCAAAGTCAAAGCAAAATCTGAACCAAGTGGTTCAAAGCAGGCCACAATTACAAGATTCTTCAGTAAAGTAATACCTGAGATGCCTGGTGGTACTCAATCTGATAATTCTGAACCAAAGCTTGACCAAAGCTCTAAAGTTGAAGACTTGTTGCCAACTGATGATGGACAAATGTACAAGGATGAAATTGATCAATTTATGCAAATAATAAATGGGACTGAGTCATTAAAAAAATATGCCATCACTATAATTGAGAAGACAAAAGGTGATATCAATAAGGCATTGGACATATATTACGGTAATTCTGAAAATCTTGGTGAAAAGCAAATATCAGTTCAAGTGGAGAGCAAAATTGATAGACCTGTAGTGAAGAAGCATGCATCAGAGGAATTGAGAATTGTACCTGATATTTTTGACCAGAAAGTCTTGAAAGATAATGTAGATGCTACTCACTTATCTCTACCACCTGAGAAATACAACCCTAAAGAGCATGCGTGTTGGAGAGATGGACAGCCTGCACCATATTTACATATTGCAAGAACCTTCAACCTGCTTGAGGGTGAGAAAGGAAGGATTAAAGCTACATCATTGCTATGCAATATGTTCAGAAGTTTGTTGGCCTTATCTCCAGCAGATGTGCTTCCTGCTGTGTATCTATGCACTAACAAAATTGCTGCAGACCATGAAAATAAGGAACTGAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCATGTGGAACAAATCGATTGAAAATAAGGGAGATGTTTAACAAATTTGGTGATCTTGGTGATGTTGCACAAGAGTGTCGTCAAACACAGAGATTGCTTGCACCACCTACACCACTTCTAATTAAGGATGTTTTCTCTGCACTACAAAAGATAAGTGTACAAACAGGCAGTCGAAGCACATCTCGGAAGAAAGGCATCATTGTTCATCTCATGCGTTCCTGCCGTGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTGGTCAGGAACCTAAGGATTGGGGCAATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGCTATGAATTCTTGCCCTACTTTGCACCAAGAAGGAACTGCAGAAAATATAAAGGAGAAACTACAGGTTCTTTCTATGGCAGTTGTTGAAGCATATAACATACTGCCAAATTTAGATCTCATAGTTCCATCTCTCATGAACCAAGGCATTGATTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCCCTATTAAGCCTATGCTAGCAAAGATCACCAATGGTATTCCCCAAGCATTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAAATTAGTTGATGGATCAATTCGTGTTTTTTCAAGAAATGGGGACGAATCAACTTCAAGATTTCCTGATCTGATTGACATAATTAAGGAATCCAGCAAGCCGGTTGCATCAACTTTCATAATGGATGCTGAAATTGTTGGTATTGACAGAAAAAATGGATATAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGAAGAGGTGGCAAAGATACATTAGTTACTTCAGAGAGCATTAAGGTGGATATTTGCATCTTTGTCTTTGATATCATGTTCGCAAATGGAGAGCAGTTATTGGGTTTTCCTCTCCGCCTTAGACGAAAGTATCTGAAGGATTTGTTCTATGATGAGAAACCTGGGTATTTTGAATATGCAAAAGAAACAACTGTTGAAGCAGATGATGCTTGCTTAACCTGTGAAGCCACATTAACTAAGATAAATGCTTTCCTGGAAGATGCTCTTCGCTCTTCATGTGAAGGAATTATGGTGAAAACATTGGATGTTGATGCTGGGTATTCTCCATCAAAGCGTTCTGACAAATGGCTAAAAGTCAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCGATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTATGGCATGTTTCAATCCTGAAACAGAGGAGTATCAAAGTGTATGTCGTGTGATGTCTGGATTCTCAGATTCATTTTACATAGAGATGAAACAATTCTTCTCTGGGGACAAAGTCTTGTCCAAAAAACCACCATATTATCAAACAAGAGAGGCACCAGACATGTGGTTTTGTCCACAAGTTGTTTGGGAAATAAGAGGAGCAGATTTTACTGTATCCCCAGTTCATCATGCTGCCATTGGTTTAGTTCATCCATCTCGAGGCATCTCAATCAGATTTCCAAGATTTATTAGTTGTGTCTCAGACAGAAGCCCAGAAGAATGTAGCACAGCTGCCGATATAGGTGAAATGTTTCATTCTCAGACTCGGAAGATGGATATCACAGCTGGAGACTGA 4209 0.4367 MDSQTLDSTKLYLTALKTLQSEAPPTPSLPPLPSSIPHSKLIPHTRFLVDAFRHAGPHSHSYFLSHFHSDHYSGLSPSWSRGVIFCSHTTAALLRRILHIPAAFIVPLPLRQPLRIDGAHVTLLDANHCPGAVQFLFSVPRATADAAALRYVHTGDFRFCNSMVSEPALAPFVGADAVFLDTTYCNPKFVFPSQEESIDYVASVVESVERECEHNSSDKVLFLVATYVIGKEKILLELARRFKRKIHVDARKMEVLRVLGYGENGEFTEDGKESNIHVVGWNLLGETWPYFRPNFVRMKEVMAERGGSYSKVVGFVPTGWTYEVKRNRFAVKSKDLFKIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKSDSKHADKMRKYFARLVDETANKQDFLRGFLRDPGEKGEAGFKAEKVVSDALGPGQDMEEEEINALKKTEGDMGIGPVVAVGLSSFMEETYAQDPTLLNDEEKEKIIQELTFCLPTWVTRNQLLDLISISGSNVIEAVSNFYERETEFHEQVISCQTPVSTSKCCSLNGMDSLAKPCLNTNNTGKNIDIFPSQDSKLTNLRHTVPSPISPAKRKRSTDSKQNKKAKVKAKSEPSGSKQATITRFFSKVIPEMPGGTQSDNSEPKLDQSSKVEDLLPTDDGQMYKDEIDQFMQIINGTESLKKYAITIIEKTKGDINKALDIYYGNSENLGEKQISVQVESKIDRPVVKKHASEELRIVPDIFDQKVLKDNVDATHLSLPPEKYNPKEHACWRDGQPAPYLHIARTFNLLEGEKGRIKATSLLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSLVTAALEEACGTNRLKIREMFNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISVQTGSRSTSRKKGIIVHLMRSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSCPTLHQEGTAENIKEKLQVLSMAVVEAYNILPNLDLIVPSLMNQGIDFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDESTSRFPDLIDIIKESSKPVASTFIMDAEIVGIDRKNGYRIMSFQELSSRGRGGKDTLVTSESIKVDICIFVFDIMFANGEQLLGFPLRLRRKYLKDLFYDEKPGYFEYAKETTVEADDACLTCEATLTKINAFLEDALRSSCEGIMVKTLDVDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKQFFSGDKVLSKKPPYYQTREAPDMWFCPQVVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFISCVSDRSPEECSTAADIGEMFHSQTRKMDITAGD* 1403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2414 1402 MobiDBLite consensus disorder prediction 565 580 - -
Gso18g2414 1402 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1043 1051 IPR016059 GO:0003909
Gso18g2414 1402 Gene3D - 190 347 - -
Gso18g2414 1402 Gene3D - 750 1021 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gso18g2414 1402 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 753 1002 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gso18g2414 1402 SUPERFAMILY Metallo-hydrolase/oxidoreductase 45 370 IPR036866 -
Gso18g2414 1402 MobiDBLite consensus disorder prediction 565 651 - -
Gso18g2414 1402 Gene3D - 1244 1400 IPR012340 -
Gso18g2414 1402 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 975 1241 - -
Gso18g2414 1402 Pfam DNA repair metallo-beta-lactamase 265 370 IPR011084 -
Gso18g2414 1402 Pfam DNA ligase N terminus 773 949 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gso18g2414 1402 ProSiteProfiles ATP-dependent DNA ligase family profile. 1130 1277 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gso18g2414 1402 SUPERFAMILY Nucleic acid-binding proteins 1248 1392 IPR012340 -
Gso18g2414 1402 CDD SNM1A-1C-like_MBL-fold 40 187 - -
Gso18g2414 1402 Gene3D - 42 369 IPR036866 -
Gso18g2414 1402 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 3 776 - -
Gso18g2414 1402 Pfam ATP dependent DNA ligase C terminal region 1265 1372 IPR012309 GO:0003910|GO:0006281|GO:0006310
Gso18g2414 1402 Pfam ATP dependent DNA ligase domain 1019 1239 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gso18g2414 1402 Gene3D DNA ligase/mRNA capping enzyme 1048 1179 - -
Gso18g2414 1402 Gene3D - 1030 1243 - -
Gso18g2414 1402 PANTHER DNA LIGASE 3 776 - -
Gso18g2414 1402 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 831 1389 IPR000977 GO:0003910|GO:0005524|GO:0071897
Gso18g2414 1402 CDD OBF_DNA_ligase_I 1248 1391 - -
Gso18g2414 1402 CDD Adenylation_DNA_ligase_I_Euk 1010 1242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2414 Gso-Chr18 56829944 56842625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2414 755 1392 Core DNA Replication Machinery Family AT1G08130 38.750 9.15e-163 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2414 - - gmx:100807673 2763.41