Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2409 ATGGATGAGCAAATTATGTCATCTCCTAATATATTGGTACAGTGTCGAATATGCCACGATGAGGATGAAGAGTCCAACATGGACACACCTTGTTCTTGTTGTGGCACATTGAAGTATGCACACAAAAAATGTGTTCAAAGATGGTGCAACGAGAAGGGTGATACTATATGTGAAATTTGCCAGCGGCAACTCAAGCCCGGCTATACTGCACCTCCATTGCCTCCTCTATTACATTATGGTGGTTCTCCAATAAATTTTGGATGGAACTGGGAGATTTCAAGAAGGGATTTTCAAAACCACCAGTTCATAGCGATGTTTAATGCTAATCGTGAATTCCTAGACCTTGACTTTGCATATTCATCAGCACCTTCTACAAGAAGCTTGATATTTTTCCGCATTATTGCCATTATTTTTATTGTTCTTCTTCTTTTACGCCATACACTTCCAATCATATTTATACTCAGTGGAGCAAGAGCATATTCATTGGCTGTGTTTATGCTAGTAGTGTTGAGAATCATTGGAATGATTGTACCAGTATATATAATGGTTAAAGCTATTATTGCAATGCAACAGTTTCAATATCAGACACTCGATATTCAGCATTCCCCTATGCAAGCACACGAGGAAAATGAAATAGGACAATCTCAGTTGCGTGTCATTCATATTCAGTGA 672 0.3839 MDEQIMSSPNILVQCRICHDEDEESNMDTPCSCCGTLKYAHKKCVQRWCNEKGDTICEICQRQLKPGYTAPPLPPLLHYGGSPINFGWNWEISRRDFQNHQFIAMFNANREFLDLDFAYSSAPSTRSLIFFRIIAIIFIVLLLLRHTLPIIFILSGARAYSLAVFMLVVLRIIGMIVPVYIMVKAIIAMQQFQYQTLDIQHSPMQAHEENEIGQSQLRVIHIQ* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2409 223 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
Gso18g2409 223 SUPERFAMILY RING/U-box 13 64 - -
Gso18g2409 223 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Gso18g2409 223 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 2 215 IPR033275 -
Gso18g2409 223 CDD RING_CH-C4HC3_MARCH 15 61 - -
Gso18g2409 223 Pfam Protein of unknown function (DUF3675) 66 186 IPR022143 -
Gso18g2409 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 69 IPR013083 -
Gso18g2409 223 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 2 215 - -
Gso18g2409 223 SMART ringv_2 14 61 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2409 Gso-Chr18 56798484 56800811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2409 14 61 C3H Transcription Factor Family AT2G37950 45.098 1.40e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2409 - - gmx:100806609 443.736