Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2381 ATGGCCGGAAAAGGAGATGGTCCTGCTATCGGAATCGATCTCGGCACCACCTACTCCTGCGTCGAAGTGTGGCAGCACGACCGTGTCGAAATCATCGCCAATGACCAGGGTAACAGAACCACGCCGTCTTACGTCGCTTTCACTGATTCCGAGCGTTTGATCGGTGACGCCGCCAAGAACCAGGTCACCATGAACCCCGTCAACACCGTCTTCGATGCTAAGCGTTTGATTGGAAGGAGATTTTCTGATGCCTCCGTTCAGAGTGACATGAAGCTATGGCCATTTAAGGTCATCCCTGGTCCTGCTGACAAACCTATGATTGTGGTCAACTACAAGGGTGAGGACAAGCAGTTCTCCGCTGAGGAAATTTCTTCCATGGTTCTCATGAAGATGCGTGAGATTGCCGAGGCTTATCTCGGTTCCACAGTGAAGAATGCCGTGGTCACTGTTCCCGCTTACTTCAATGACTCCCAGCGTCAGGCCACGAAGGATGCTGGAGTCATTGCGGGTCTCAATGTCATGCGTATCATCAATGAACCCACTGCTGCTGCCATTGCTTACGGTCTTGACAAGAAGGCCACCAGTGTGGGTGAGAAGAACGTGTTGATTTTTGACTTGGGTGGTGGTACCTTTGATGTCTCTCTTCTCACAATTGAGGAGGGTATTTTTGAGGTCAAGGCCACTGCCGGAGATACTCATCTTGGAGGAGAAGATTTTGATAACAGGATGGTTAACCATTTTGTTCAGGAATTCAAGAGGAAGCACAAGAAGGACATCAATGGAAACCCTAGGGCTCTTAGGAGGTTGAGGACTGCCTGTGAAAGGGCGAAGAGGACCCTATCATCTACTGCACAAACCACAATTGAGATAGATTCTCTTTATGAGGGTGTTGACTTCTACACAACAATCACCCGTGCCAGGTTTGAGGAGCTCAACAGGGATCTCTTCAGGAAGTGTATGGAGCCCGTTGAGAAGTGTTTGAGGGATGCTAAGATGGGCAAGAGCACTGTCCATGACGTTGTCCTTGTTGGTGGATCCACTAGAATTCCTAAAGTGCAGCAATTGTTGCAGGATTTCTTCAATGGCAAGGAGCTTTGCAAGAGCATTAACCCCGATGAGGCCGTTGCTTATGGAGCTGCTGTACAGGCTGCTATTTTGAGTGGTGAGGGCAACGAGAAAGTGCAGGATTTGCTGTTGTTGGATAAGTACAAGGCCGAGGATGAGGAGCACAAGAAGAAGGTCGACGCAAAGAATGCTTTGGAGAACTATGCCTACAACATGAGGAACACCATTAAGGATGAGAAGATTGCATCAAAGCTTTCTGATGACGACAAGAAGAAAATCAAAGATGCCATCGAGAGTGCTATTCAGTGGTTGGATGGAAACCAGCTAGCGGAGGCTGACGGGTTGGAAGACAAGATGAAGGAGCTTGAGAGCATTTGCAACCCAATCATTGCCAAAATGTACAAAGCTGAAGATGAGATGTATAGGAAGAAGGTAGAAGCAAGGCATGCATTGGAGAAGTACGCATACAACATAAGGAATGCTATAAACGATAAGGGGATTAGTTTGAAGCTTTCTCCGGAAGACAAGGAAAAGATCAATGATGCAGTTGATCGTGCCTTAGAATGGCTTGAGGTCACAGTGGATGCAGATGTTGACGAGATCCGGCGCATTCTTTCTAGCATCTTGTCATCCATCTTTTCATGCATTGCTGGTAGTAATAAAATAAAGACGTTCTGGTTAGAAGAATTGAGGAAATTCGCTCTCAAAGCAGTATTTTTAGCTGGGAAAATCATTGGGTTTGTTTTTGAAAGGAAGTTGTAA 1827 0.4691 MAGKGDGPAIGIDLGTTYSCVEVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVTMNPVNTVFDAKRLIGRRFSDASVQSDMKLWPFKVIPGPADKPMIVVNYKGEDKQFSAEEISSMVLMKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDINGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYTTITRARFEELNRDLFRKCMEPVEKCLRDAKMGKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIASKLSDDDKKKIKDAIESAIQWLDGNQLAEADGLEDKMKELESICNPIIAKMYKAEDEMYRKKVEARHALEKYAYNIRNAINDKGISLKLSPEDKEKINDAVDRALEWLEVTVDADVDEIRRILSSILSSIFSCIAGSNKIKTFWLEELRKFALKAVFLAGKIIGFVFERKL* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2381 608 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Gso18g2381 608 Gene3D - 399 487 IPR029048 -
Gso18g2381 608 Pfam Hsp70 protein 9 401 IPR013126 GO:0005524|GO:0140662
Gso18g2381 608 Pfam Hsp70 protein 402 490 IPR013126 GO:0005524|GO:0140662
Gso18g2381 608 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 415 493 IPR029048 -
Gso18g2381 608 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Gso18g2381 608 Gene3D - 192 366 - -
Gso18g2381 608 PANTHER HEAT SHOCK PROTEIN 70KDA 401 490 IPR013126 GO:0005524|GO:0140662
Gso18g2381 608 PANTHER HEAT SHOCK PROTEIN 70KDA 1 401 IPR013126 GO:0005524|GO:0140662
Gso18g2381 608 PANTHER HEAT SHOCK PROTEIN 70KDA 489 572 IPR013126 GO:0005524|GO:0140662
Gso18g2381 608 Gene3D - 10 384 - -
Gso18g2381 608 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 489 572 - -
Gso18g2381 608 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 401 - -
Gso18g2381 608 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 401 490 - -
Gso18g2381 608 Gene3D - 71 126 - -
Gso18g2381 608 Gene3D Actin; Chain A, domain 4 235 318 - -
Gso18g2381 608 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Gso18g2381 608 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Gso18g2381 608 PRINTS 70kDa heat shock protein signature 8 21 - -
Gso18g2381 608 PRINTS 70kDa heat shock protein signature 36 48 - -
Gso18g2381 608 PRINTS 70kDa heat shock protein signature 58 66 - -
Gso18g2381 608 PRINTS 70kDa heat shock protein signature 146 166 - -
Gso18g2381 608 PRINTS 70kDa heat shock protein signature 209 219 - -
Gso18g2381 608 PRINTS 70kDa heat shock protein signature 337 353 - -
Gso18g2381 608 PRINTS 70kDa heat shock protein signature 369 389 - -
Gso18g2381 608 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 501 558 IPR029048 -
Gso18g2381 608 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Gso18g2381 608 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Gso18g2381 608 Gene3D - 488 571 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2381 Gso-Chr18 56593593 56602911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2381 486 569 Calmodulin-binding Proteins AT5G02500 47.126 9.83e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2381 K03283 - csin:114277576 826.624