Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2376 ATGGATAATTATGGATCATCTTCTCCATACCGGTATCCAAACCAATATATGTACCCTCCCAATCCTCACCAACCGTACCCTCCTCCTCCAGGTTCAGCTCCTGATCCATATGCACAACATGTTCCTTATCAACCATATCCTTACCTTTCTTCACATTCCTTCAACTATTCCTATCCTCCACCTCCTAGATCTTCCTCACATTCTGGCCATTTTGAGTATTCCTATCCCCCTCCTCACCCTCCACCATCTTATGCTAATCCTCCTTACCCTTATCCCTACCATGTTCCTCCACCAAATCATGATCCTCCCAAGCCTTCCCTTTCACACCATGCTAGTTTCCAACATGAACCATCTCATTATTATTATCAACAACCAAACGACGCCTATTCAGCTTCAGCTCCTCAAGTCCATCCTGATGTCCATTTGCGCACCAACAGCTTCTCTGGTCCCTACTGGCATGAGAACACTAGCACTGCAGGAGATGAAGTGTCACAAACTAGTGACAATTCCAAGCCTTCTCAGGGTTCTGCTTACCCGTCTTTGGATGATCTTATGAGTAATGTTCGATTGTCTGATGACCAGCCAACTGCTCCTGCATCACCACCTGCGCCTGCAGGGCAACCATTTATGCATTCCATTTCAGTTCCAAAGTTGCAACAGAAGAGAGAGGAGTTTTATGGATATTCGAATAACTCCTTCTCGGGGTGGGGATCCTCCTACCACAGTCGGGTGGATTCGTCTAGACTTTCAGATTTTTCTGGCTCATTTAATGAATCAGTGCATAGTCAGAGTTTGCAGATTGTTCCAGTGCAGAATAAAGGGTCCTTGAGAGTTTTGCTCCTACATGGAAATTTAGATATATGGGTCCATGAAGCCAAGAATCTTCCAAATATGGACATGTTTCACAAAACATTAGGAGATATGTTTGGTAAATTACCAGGCAGTGTGGGCAACAAAATTGAAGGAACTATGAATAAGAAGATTACTAGTGATCCTTATGTATCAATTTCAGTATCCAATGCTGTAATTGGGAGGACTTACGTCATTAGCAACTCTGAAAATCCTGTTTGGTTGCAGCATTTCTATGTTCCTGTTGCATATCATGCTGCTGAAGTGCACTTTCTTGTTAAAGACAGTGATATTGTGGGTTCACAGCTCATTGGCATTGTGGCAATTCCAGTGGAGAAAATATACTCAGGAGAAGTAGTTGAAGGAACCTTCCCTATCCTGAATAATAATGGGAAGCCTTGTAAGCAAGGTGCTGTCCTTACCCTATCCATTCAGTACATACCTATGGAGAAATTGAGCATTTATCACCAAGGAGTTGGAGCAGGGCCAGAATACATTGGGGTTCCCGGCACATATTTTCCTTTGAGGAGGGGTGGAACCGTTACTCTGTATCAAGATGCTCATGTTCCAGATGGCAGCCTCCCTAATGTGTTGCTTGACAGTGGAATGTATTATGTGAATGGAAAGTGTTGGCAAGATATCTTTGATTCCATAAGTCAAGCTCGGCGTTTGATTTATATTACAGGATGGTCAGTGTGGCACAAAGTAAGGTTGGTTAGGGATGCTGCTGGTTATGCTTCAGATTATACATTGGGTGATCTTCTAAGGTCAAAGTCACAGGAAGGAGTAAGAGTGCTTCTCCTTATCTGGGATGATCCTACATCAAGAAGCATTTTAGGTTATAAAACAGATGGTGTCATGGCAACTCATGATGAGGAGACTCGTAGATTTTTTAAGCACTCTTCAGTGCAAGTGCTTCTTTGTCCTCGCAGTGGCAAACGACATAGCTGGATCAAGCAAAAGGAAGTTGGAACAATATATACACATCATCAGAAAACTGTGATTGTGGATGCTGACGCCGGAAATAATAGAAGAAAAATTATAGCATTTGTTGGTGGACTTGATTTTTGTGATGGGCGATATGATACTCCCCACCATCCTCTTTTTAGAACATTGAATACAATACATAAGGATGACTACCACAACCCTACTTTCACGGGCAATGCTGGAGGTTGTCCACGGGAGCCATGGCATGATTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTGACTAACTTTGAGGAGCGCTGGTTAAAAGCTTCAAAACCTCACGGGATTAAAAAGTTGAAAATTTCAGATGATGATGCTTTGCTAAGGCTGGAAAGAATTCCAGATGTTATTGGCATCAATGATGCTCCAAGTGTTGGTGAAGATGATCCTGAAGTTTGGCATGCTCAGATATTTCGTTCAATTGATTCAAATTCCGTTAAGAGGTTTCCAAAGGATCCAAAAGATGCAACAAGCAAGAACCTAGTATGTGGAAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTTAAGACCATTCGTGCTGCACAACATTACATTTATATAGAGAATCAATATTTCATTGGCTCTTCATACAATTGGAGTCAACATAAAGACCTAGGTGCTAATAACTTAATCCCAATGGAAATTGCTCTAAAGATTGCTGAAAAGATAAAAGCAAATGAGAGATTTGCAGTGTATGTTGTTATTCCAATGTGGCCAGAAGGTGTTCCAACAGGGGCTGCCACACAAAGGATTCTATTTTGGCAGAATAAAACAATGCAAATGATGTATGAGACAATTTACAAGGCTTTGGTTGAGGCAGGGCTTGAAGCAGCATTTTCTCCACAAGATTATTTGAACTTTTTCTGTCTTGGTAATCGAGAGGCCGGGAATTTGTATGATAATGTCAGCATGACCGGAGCTCCTCCCCCAGCAAATAGTCCACAAGCAGCCAGCAGAAATAGCCAACGCTTCATGATTTATGTTCATTCTAAAGGCATGATAGTTGATGATGAATATGTGATATTGGGGTCTGCAAACATCAACCAGCGCTCCATGGAAGGAACAAGGGACAGTGAGATTGCAATGGGAGCCTATCAACCTCATCATACTTGGGCAAGAAAACAATCTTATCCACATGGACAAATCCATGGATATAGGATGTCACTTTGGGCAGAACATACAGGAACAATTGAAGAGTGCTTTTTGCAACCGGAGAGCCTTGAATGTGTAAGAAGGGTTAGAGCAATGGGTGAAATGAACTGGAAACAATTTTCAGCTAATGAAGCAACAGAGATGAAAGGGCATCTAATGAAATACCCAGTAGAAGTTGATCGAAAGGGCAAGGTTAGACCCCTTCAGGACTGTGAAGAGTTCCCGGATGTAGGAGGAAAAATAGTAGGATCTTTTCTTGCCATGAAGGAGAACCTAACCATTTGA 3294 0.4199 MDNYGSSSPYRYPNQYMYPPNPHQPYPPPPGSAPDPYAQHVPYQPYPYLSSHSFNYSYPPPPRSSSHSGHFEYSYPPPHPPPSYANPPYPYPYHVPPPNHDPPKPSLSHHASFQHEPSHYYYQQPNDAYSASAPQVHPDVHLRTNSFSGPYWHENTSTAGDEVSQTSDNSKPSQGSAYPSLDDLMSNVRLSDDQPTAPASPPAPAGQPFMHSISVPKLQQKREEFYGYSNNSFSGWGSSYHSRVDSSRLSDFSGSFNESVHSQSLQIVPVQNKGSLRVLLLHGNLDIWVHEAKNLPNMDMFHKTLGDMFGKLPGSVGNKIEGTMNKKITSDPYVSISVSNAVIGRTYVISNSENPVWLQHFYVPVAYHAAEVHFLVKDSDIVGSQLIGIVAIPVEKIYSGEVVEGTFPILNNNGKPCKQGAVLTLSIQYIPMEKLSIYHQGVGAGPEYIGVPGTYFPLRRGGTVTLYQDAHVPDGSLPNVLLDSGMYYVNGKCWQDIFDSISQARRLIYITGWSVWHKVRLVRDAAGYASDYTLGDLLRSKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRSGKRHSWIKQKEVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDFCDGRYDTPHHPLFRTLNTIHKDDYHNPTFTGNAGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKASKPHGIKKLKISDDDALLRLERIPDVIGINDAPSVGEDDPEVWHAQIFRSIDSNSVKRFPKDPKDATSKNLVCGKNVLIDMSIHTAYVKTIRAAQHYIYIENQYFIGSSYNWSQHKDLGANNLIPMEIALKIAEKIKANERFAVYVVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEAGLEAAFSPQDYLNFFCLGNREAGNLYDNVSMTGAPPPANSPQAASRNSQRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDSEIAMGAYQPHHTWARKQSYPHGQIHGYRMSLWAEHTGTIEECFLQPESLECVRRVRAMGEMNWKQFSANEATEMKGHLMKYPVEVDRKGKVRPLQDCEEFPDVGGKIVGSFLAMKENLTI* 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2376 1097 Gene3D Endonuclease Chain A 486 723 - -
Gso18g2376 1097 MobiDBLite consensus disorder prediction 111 131 - -
Gso18g2376 1097 Pfam C2 domain 283 409 IPR000008 -
Gso18g2376 1097 SMART C2_3c 284 406 IPR000008 -
Gso18g2376 1097 MobiDBLite consensus disorder prediction 57 71 - -
Gso18g2376 1097 Pfam Phospholipase D C terminal 1017 1087 IPR024632 -
Gso18g2376 1097 MobiDBLite consensus disorder prediction 15 36 - -
Gso18g2376 1097 Gene3D C2 domain 278 422 IPR035892 -
Gso18g2376 1097 MobiDBLite consensus disorder prediction 148 194 - -
Gso18g2376 1097 SUPERFAMILY Phospholipase D/nuclease 777 1029 - -
Gso18g2376 1097 MobiDBLite consensus disorder prediction 74 104 - -
Gso18g2376 1097 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 608 643 IPR001736 GO:0003824
Gso18g2376 1097 SMART pld_4 608 643 IPR001736 GO:0003824
Gso18g2376 1097 SMART pld_4 943 970 IPR001736 GO:0003824
Gso18g2376 1097 Gene3D Endonuclease Chain A 754 998 - -
Gso18g2376 1097 PANTHER PHOSPHOLIPASE D 181 1097 IPR015679 -
Gso18g2376 1097 PANTHER PHOSPHOLIPASE D ALPHA 1 181 1097 - -
Gso18g2376 1097 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 943 970 IPR001736 GO:0003824
Gso18g2376 1097 MobiDBLite consensus disorder prediction 57 210 - -
Gso18g2376 1097 ProSiteProfiles C2 domain profile. 261 407 IPR000008 -
Gso18g2376 1097 SUPERFAMILY Phospholipase D/nuclease 487 708 - -
Gso18g2376 1097 Pfam Phospholipase D Active site motif 944 970 IPR001736 GO:0003824
Gso18g2376 1097 Pfam Phospholipase D Active site motif 609 643 IPR001736 GO:0003824
Gso18g2376 1097 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 281 432 IPR035892 -
Gso18g2376 1097 MobiDBLite consensus disorder prediction 1 44 - -
Gso18g2376 1097 CDD C2_plant_PLD 278 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2376 Gso-Chr18 56559386 56567898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2376 44 1097 Phospholipase D Gene Family (Wang group) AT2G42010 67.397 0.0 1444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2376 K01115 - gmx:100801286 2106.64