Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2362 ATGAAGAGAGAAAGAGAGGTTGATAGCTTAACCATGGCGAATTGTTTGATGTTGCTTTCTCGTGGAAGTGAATTTGAGGCCACCTACTCAAGCACTTCTATGAGCAATCGTGTCTTTGAGTGCAAGACATGTAATAGGCAATTCCCTTCATTTCAAGCACTTGGTGGCCACAGGGCTAGCCACAAAAAGCCTAGGTTGATGGCAGGAGATATCGAAGGCCAATTGCTTCATGATTCACCCCCAAAGCCTAAGACTCATGAGTGTTCCATTTGTGGGTTGGAGTTTGCTATAGGGCAAGCCTTGGGAGGTCACATGAGGAGGCACAGAGCGGCGAATTTGAATGGAAACGTGCACAATTCTACGGCTACGAGTAGTAGTAGTGGGGGTAGCAGTTTTGATTCATCGCCAAAGAAGAAAGCTGACAACAAGAGAGTTTTGGTTTTGGATTTGAATCTGACACCCTTTGAGAATGATTTGGAGTTTTTGAAGATTGGAAAACCAACCACTTTTGTTGATTATTTGTATTGA 528 0.4375 MKREREVDSLTMANCLMLLSRGSEFEATYSSTSMSNRVFECKTCNRQFPSFQALGGHRASHKKPRLMAGDIEGQLLHDSPPKPKTHECSICGLEFAIGQALGGHMRRHRAANLNGNVHNSTATSSSSGGSSFDSSPKKKADNKRVLVLDLNLTPFENDLEFLKIGKPTTFVDYLY* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2362 175 MobiDBLite consensus disorder prediction 115 135 - -
Gso18g2362 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Gso18g2362 175 SMART c2h2final6 39 61 IPR013087 -
Gso18g2362 175 SMART c2h2final6 86 108 IPR013087 -
Gso18g2362 175 PANTHER ZINC FINGER PROTEIN ZAT5 5 167 - -
Gso18g2362 175 MobiDBLite consensus disorder prediction 115 138 - -
Gso18g2362 175 PANTHER CYS2-HIS2 ZINC FINGER TRANSCRIPTION FACTOR 5 167 - -
Gso18g2362 175 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Gso18g2362 175 SUPERFAMILY beta-beta-alpha zinc fingers 37 108 IPR036236 -
Gso18g2362 175 Gene3D Classic Zinc Finger 37 108 - -
Gso18g2362 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Gso18g2362 175 Pfam C2H2-type zinc finger 38 64 - -
Gso18g2362 175 Pfam C2H2-type zinc finger 86 110 - -
Gso18g2362 175 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2362 Gso-Chr18 56442699 56443532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2362 1 171 C2H2 Transcription Factor Family AT2G37430 44.505 1.28e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso18g2362 zf-C2H2_6 8.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2362 - - gmx:100781134 345.51