Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2354 ATGGTGGGGAACGATGACGCGGGCCACCTCTCCGCCTCCCGGAAGATGTTCTGGCGGTCGGCGTCGTGGTCCTCCTCGCGAACCGCCGCCGGAAACGCCTCTTCCGGCGAGACGGAGAAGGGTTTCGCTGATTCCGGTGCCGCTGACGGTACTCACGGCCAGAACCGGCGGTTTGGTCCGCCGCCGCTGACGCCTCGGTCGCAGCAGAATTGCAAGGCGCGGTCGTGCCTGCCACCGCTGCAGCCGCTCTCCATCGCCCGGCGGAGCCTCGACGAGTGGCCGAAGGCGGGCTCCGACGACATCGGTGAGTGGCCGCAGCCGCCTACCACCCCCGGCGGGAGAGGTAATGGTAGCAATGGTGAAAGGTTGAAACTTGATTTGTCTTCCATTCAGCATAACAACCCTGATCATAGTAGGAGTAACAATGGGAATGGGCTTGTGAAGAGGGATAAGATTGCATTTTTTGATAAAGAGTGTTCAAAAGTTGCTGATCATGTGTACCTTGGTGGTGATGCTGTTGCCAGGGATAGGGACATCTTGAAGCATAATGGGATAACTCATGTCTTGAATTGTGTGGGGTTTGTGTGTCCTGAGTACTTTAAGGCTGATTTTGTTTATAGGACTTTGTGGCTGCAGGATAGTCCATCTGAGGATATTACTAGTATTTTGTATGATGTGTTTGACTATTTTGAGGATGTCAGGGAGCAAGGTGGGAGGGTGTTTGTGCACTGTTGTCAAGGGGTGTCTAGGTCTACCTCCTTGGTCATTGCTTACCTTATGTGGAGGGAAGGGCAGAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCGGCGAGAGGGATTGCTGATCCAAATATGGGGTTTGCTTGCCAGCTGTTGCAGTGCCAGAAGAGGGTTCATGCTGTCCCTCTTAGCCCTAGCTCTTTGCTGAGGATGTATAGAATTGCTCCCCATTCGCCGTATGATCCTTTGCATCTTGTTCCAAAAATGTTGGTGGATCCTTCATTAGCTGCATTGGACTCCAGAGGTGCGTTTATCGTGCACATTCCTTCAGCAATATATGTTTGGGTGGGTAAGAACTGTGAGGCCACCATGGAGAGGGACGCCAGAGGGGCTGTTGGCCAGATTGTCCGGTATGAGAAGGTACAAGGGCCTATTGTGATGATTAAGGAAGGTGAAGAGCCTGTTTACTTTTGGGATGCTTTTTCAGATTTTCTGCCCTTAATGGACAAATCTGGCAAATCTGGCAGTAGGATAGAAGATGGAAAACTATTCGTTTTGCCTGGTAAGAGGAGAGTAGATGCATACAATGTTGATTACGAAGTTTTCACAAAAGCAATCACGGGAGGCTTCGTGCCTCCATTTGGTTCATCTGGTGAACATGAAACCCATTTGCCTGCAAGGGAGAGTAGTTGGAGTGTAAGGCGTAAAGTTTCCCATGGTAACATGAAAGAGGTTGTTACGGTCCCTCGGCTATCGTTTCCAAGGGTTTATTCGGATTCCATGTTGTGTCTTCGTACATCAGCAAATGCAATTTTGTCTCCATCCTCATCCCTTTCGTCATCTTCATCATCTATATCATCATCATCCTCACCGTCTTTTGTTTCTCCAGATTCCATTACTTCTGATTCTAGCATTCATTCAAAGTTTTTGTTAGAAGTGTCCCCAGACTCTTCATCTCTGTCTAATTTTTCTAGTTTGTCAATCACATCAAATTCTACTTCTCATAATTTTTCTAGTTTGTCCATCACATCAAATTCTACTTCTCAACCAGTGTCTCACAGTACAGATATCCTTGGTGTCAAGTTATCACATCCCTTGTTTCAGTCAGCCTCTTTACCATTGAAGAAACCATCAACTTCCCTTGCTGAACGCAGAGGTAGCTTGTCAAAAATTCTGATGTTGCCGCTAATGAATGATAAGACACAAGTAACAGATAAATCAGATAAATCGACAACGTCTCATGCTAGTCAAGAATCTGACATTCTTGTTAATGACAATGTTAGCTATCAACAACAATCAGATAGTAAAGATTATTTTTGCGGGTCTAACAACCATGCCAAGGATGGAGGTGTGAATTCCATTCAAAAGTGTGAGCCAAGCATTGCTGATAGCATGCACCTCAAGGAATCATCACTTAGTCAGTCTACCACATTGAAGGGAACTAATGACAGTGGCTTACTGCAGTATAATGTCGCACAGACTTCGGTATATCACTGGCCCAGTATAGAAAAGATTGAGACATTTGGTGCAAGTCATTTGGATTCTAAATCTGCTTTTGTCATATTCTCTCCCAGTATGCATGTACATGCAGGGAACATTTTATATATTTGGGTAGGGAGGTCTTTCAGTTGTGACGCTTCACAGGTTCACTTAGATATTGATAAACAATCAGATGTAGGAGCTGTCGACTGGAATCAAATTGGATGTGATCTCCTTGCTCGGTTTAGTTTGCCAAAGAACTCAGTCATCAAGGTTGTTAAAGAGAATGAGGAACCCTCAGAGTTCCTTGCTTTGCTGAGTTCATTGTAG 2529 0.4599 MVGNDDAGHLSASRKMFWRSASWSSSRTAAGNASSGETEKGFADSGAADGTHGQNRRFGPPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTTPGGRGNGSNGERLKLDLSSIQHNNPDHSRSNNGNGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKHNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAVPLSPSSLLRMYRIAPHSPYDPLHLVPKMLVDPSLAALDSRGAFIVHIPSAIYVWVGKNCEATMERDARGAVGQIVRYEKVQGPIVMIKEGEEPVYFWDAFSDFLPLMDKSGKSGSRIEDGKLFVLPGKRRVDAYNVDYEVFTKAITGGFVPPFGSSGEHETHLPARESSWSVRRKVSHGNMKEVVTVPRLSFPRVYSDSMLCLRTSANAILSPSSSLSSSSSSISSSSSPSFVSPDSITSDSSIHSKFLLEVSPDSSSLSNFSSLSITSNSTSHNFSSLSITSNSTSQPVSHSTDILGVKLSHPLFQSASLPLKKPSTSLAERRGSLSKILMLPLMNDKTQVTDKSDKSTTSHASQESDILVNDNVSYQQQSDSKDYFCGSNNHAKDGGVNSIQKCEPSIADSMHLKESSLSQSTTLKGTNDSGLLQYNVAQTSVYHWPSIEKIETFGASHLDSKSAFVIFSPSMHVHAGNILYIWVGRSFSCDASQVHLDIDKQSDVGAVDWNQIGCDLLARFSLPKNSVIKVVKENEEPSEFLALLSSL* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2354 842 SUPERFAMILY Actin depolymerizing proteins 745 840 - -
Gso18g2354 842 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 217 278 IPR000387 GO:0016311|GO:0016791
Gso18g2354 842 MobiDBLite consensus disorder prediction 19 39 - -
Gso18g2354 842 MobiDBLite consensus disorder prediction 61 75 - -
Gso18g2354 842 Gene3D Protein tyrosine phosphatase superfamily 131 300 IPR029021 -
Gso18g2354 842 MobiDBLite consensus disorder prediction 19 77 - -
Gso18g2354 842 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 151 299 IPR029021 -
Gso18g2354 842 MobiDBLite consensus disorder prediction 639 664 - -
Gso18g2354 842 Pfam Dual specificity phosphatase, catalytic domain 166 296 IPR000340 GO:0008138|GO:0016311
Gso18g2354 842 SUPERFAMILY Actin depolymerizing proteins 307 413 - -
Gso18g2354 842 MobiDBLite consensus disorder prediction 94 122 - -
Gso18g2354 842 CDD DSP 159 293 - -
Gso18g2354 842 SMART dsp_5 158 297 IPR020422 GO:0006470|GO:0008138
Gso18g2354 842 MobiDBLite consensus disorder prediction 514 534 - -
Gso18g2354 842 Gene3D Severin 309 405 IPR029006 -
Gso18g2354 842 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 836 - -
Gso18g2354 842 PANTHER MKPA PROTEIN 1 836 - -
Gso18g2354 842 ProSitePatterns Tyrosine specific protein phosphatases active site. 242 252 IPR016130 GO:0016311|GO:0016791
Gso18g2354 842 ProSiteProfiles Dual specificity protein phosphatase domain profile. 158 300 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2354 Gso-Chr18 56374183 56379174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2354 2 194 Protein tyrosine phosphatase (PTP) family AT3G55270 60.622 5.06e-65 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2354 - - gmx:100777406 1581.62