Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2350 ATGGCTTCTTCACTGGGTCGAAGAAGAACCCACGCTCCCAAATCTTCCTCCACCCTAAACGACGACGTTTCCTGCGAGGAATGCGGCGGAGGCCACTCTCCTTCGAAGCTTCTTCTCTGCGACAAATGCGACCGTGGCTACCACCTCTTCTGCCTCCGTCCCATTCTTCCCTCTGTCCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAACCTAAGTGTTTCCCTCTTGTGCAGACCAAAATCATTGACTTCTTTCGAATCCAACGCTCGCCCGAGGCATTGGCGAACCAAGACACGCGGAAGAAGCGAAAGAGGGGTGGGGGCTTGGTGGTTTCGAAGAAGAAGAGGAAGCTGTTGGCGTTCGTGCCGAGCGAGGATCCGAAGAGGAGATTGGAGCAAATGGCGTCGCTGGCGACGGCGTTGATCGCAACTGAAACGGAGTTCAGCAATGAGCTTACTTACATGCCTGCAATGGCGCCAAGGTCCGCTAATCGCCCTGCTCTTGAGCGCGGTGGAATGCAGGTCTTGTCAAAAGAAGACACCGAGACCTTAAACCTGTGCAAAAGTATGATGGAAAGAGGAGAATGGCCGCCTCTCATGGTTGTTTTTGATCCTCTAGAAGGCTTCACTGTAGAAGCAGATAGATCCATCAAAGATTTAACCATAATAACAGAATATGTTGGAGATGTAGACTTTTTAAAGAATAGGGAAAATGATGATGGAGATAGTATAATGACACTTCTCTCAGCTTCTGATCCTTCACGGACGCTTGTCATCTGTCCAGACAAACGAAGCAACATAGCTCGTTTCATTAACGGCATCAATAATCACACACCGGAAGGGAAAAAGAAGCAGAACTTGAAATGCGTGAGGTTTGATGTTGGAGGTGAATGTCGGGTTCTTTTAATTGCCAATAGAGATATTACAAAGGGGGAAAGGTTGTACTACGACTACAACGGAGATGAACATGAATATCCAACTGAACATTTTGTCTGA 1005 0.4826 MASSLGRRRTHAPKSSSTLNDDVSCEECGGGHSPSKLLLCDKCDRGYHLFCLRPILPSVPKGSWFCPSCSNHKPKCFPLVQTKIIDFFRIQRSPEALANQDTRKKRKRGGGLVVSKKKRKLLAFVPSEDPKRRLEQMASLATALIATETEFSNELTYMPAMAPRSANRPALERGGMQVLSKEDTETLNLCKSMMERGEWPPLMVVFDPLEGFTVEADRSIKDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPSRTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVGGECRVLLIANRDITKGERLYYDYNGDEHEYPTEHFV* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2350 334 SUPERFAMILY SET domain 192 325 IPR046341 -
Gso18g2350 334 CDD SET_ATXR5_6-like 197 334 - -
Gso18g2350 334 MobiDBLite consensus disorder prediction 1 25 - -
Gso18g2350 334 Pfam PHD-finger 25 71 IPR019787 -
Gso18g2350 334 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 7 331 - -
Gso18g2350 334 PANTHER HISTONE ACETYLTRANSFERASE 7 331 - -
Gso18g2350 334 Gene3D SET domain 106 334 IPR046341 -
Gso18g2350 334 ProSiteProfiles Zinc finger PHD-type profile. 22 72 IPR019787 -
Gso18g2350 334 CDD PHD_RSF1 25 69 - -
Gso18g2350 334 MobiDBLite consensus disorder prediction 1 23 - -
Gso18g2350 334 Gene3D - 2 73 - -
Gso18g2350 334 ProSiteProfiles SET domain profile. 200 322 IPR001214 GO:0005515
Gso18g2350 334 SUPERFAMILY FYVE/PHD zinc finger 15 79 IPR011011 -
Gso18g2350 334 ProSitePatterns Zinc finger PHD-type signature. 25 69 IPR019786 -
Gso18g2350 334 SMART PHD_3 24 70 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2350 Gso-Chr18 56332994 56335849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2350 21 69 C2H2 Transcription Factor Family AT3G01460 46.939 2.47e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso18g2350 PHD 3.4e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2350 K24406 - gmx:100775247 686.797