Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2332 ATGACTAGTTTTCAGTTTCACTTGAGAGTTTTGAGTTTGCTGATTTCAGTTTCCTATTTGCTGACATGCTTGGGGAACAATGACATACCTGTCCAGTTGAATGATGATGTTCTTGGCCTGATTGTGTTCAAATCAGACCTTAATGACCCTTCTTCTTATCTTGCTTCATGGAATGAAGATGATGCCAATCCATGCTCATGGCAATTCGTGCAGTGCAATCCTGAGAGTGGAAGAGTTTCTGAGGTCTCATTGGATGGCTTAGGATTATCTGGGAAGATTGGAAGGGGTCTTGAGAAGTTACAGCATCTAACGGTATTGTCCCTTTCTCACAACAACTTGAGTGGGAGTATTAGTCCATCACTCACTCTTTCCAATAGTCTTGAGAGGCTGAACCTTAGCCACAATGTTCTTTCTGGTTCCATTCCTACTTCTTTTGTGAATATGAATTCAATAAAATTTCTTGATCTTTCTGAGAACTCATTCTCAGGACCAATGCCTGAGAGTTTTTTTGAGAGCTGTTCTTCCCTTCATCACATTTCTCTAGCTAGGAACATGTTTGATGGACCAGTTCCTGGCTCACTGTCTAGATGTTCCTCATTGAATAGCATTAATCTTTCCAATAATCATTTCTCCGGTAATGTGGACTTTAGTGGGATTTGGTCATTGAACAGGCTTAGGACTTTGGATCTATCTAACAATGCCTTATCAGGGTCTTTACCTAATGGAATTTCATCCATACATAACTTTAAAGAGATCTTATTACAAGGTAACCAGTTTTCAGGTCCATTATCCACTGATATTGGATTCTGCCTGCATCTGAATAGGTTGGATTTCAGTGATAATCAGTTCAGTGGAGAACTGCCAGAGTCACTAGGGATGCTTAGTTCTTTGAGCTATTTCAAGGCATCAAATAATCATTTCAACAGTGAATTCCCTCAATGGATTGGTAACATGACCAGTCTGGAGTACCTAGAGCTCTCAAACAATCAGTTCACTGGAAGCATCCCACAGTCAATAGGGGAACTGAGATCACTGACTCATCTGAGCATTTCAAATAACATGCTTGTTGGAACTATTCCATCATCATTGAGTTTCTGCACAAAGTTATCTGTGGTCCAGCTCAGAGGAAATGGTTTCAACGGCACCATTCCAGAGGGTTTGTTTGGCCTAGGATTGGAGGAAATAGACTTGTCCCATAATGAATTGAGTGGCTCAATTCCACCCGGATCAAGCAGGCTCTTGGAAACTCTCACCCACTTGGATCTTTCAGATAACCATCTCCAAGGGAATATCCCTGCAGAAACCGGTCTTCTATCAAAACTAACACATTTGAATCTGTCTTGGAATGATCTTCATTCACAGATGCCTCCAGAATTTGGCCTCCTTCAGAACCTGGCAGTTTTGGATCTTCGCAATAGTGCCTTGCACGGTTCAATTCCAGCAGATATATGTGACTCAGGCAATTTAGCTGTCCTCCAACTTGATGGAAATTCATTTGAAGGGAATATTCCGTCCGAGATTGGAAATTGTAGCTCTCTTTACTTGCTGAGTTTGTCTCACAATAATTTGACTGGTTCAATTCCAAAGTCCATGTCAAAGCTAAACAAGCTCAAAATCCTCAAGCTGGAATTCAATGAACTAAGTGGAGAGATACCAATGGAGCTTGGAATGCTTCAGAGTCTTCTTGCTGTAAACATATCATACAACAGGCTCACAGGAAGGCTTCCTACAAGTAGCATATTTCAGAACTTGGACAAAAGTTCCTTGGAAGGAAACCTGGGTCTTTGTTCACCCTTGTTGAAGGGTCCATGTAAGATGAATGTCCCCAAACCACTAGTGCTTGACCCAAATGCCTATAACAACCAAATAAGTCCTCAAAGGCAAACAAACGAATCATCTGAGTCTGGCCCAGTCCATCGCCACAGGTTCCTTAGTGTATCTGCTATTGTAGCAATATCTGCATCCTTTGTCATTGTATTAGGAGTGATTGCTGTTAGCCTACTTAATGTTTCTGTAAGGAGAAGGCTAACATTTTTGGATAATGCTTTGGAAAGCATGTGCTCGAGCTCTTCAAGATCGGGAAGTCCAGCCACAGGAAAGCTTATCCTGTTTGATTCCCAGTCCTCACCTGATTGGATCAGCAATCCTGAGTCCTTGCTCAACAAGGCATCTGAGATTGGAGAAGGAGTCTTTGGAACACTCTACAAGGTTCCATTGGGATCACAAGGTAGAATGGTAGCAATCAAGAAGCTTATATCCACAAACATAATCCAATATCCTGAAGACTTTGATAGGGAAGTTAGAATCCTCGGGAAAGCAAGGCACCCAAATCTAATAGCATTGAAAGGATACTATTGGACTCCTCAACTACAACTTTTAGTAACTGAGTTTGCACCAAATGGTAGCTTGCAAGCCAAGCTACATGAAAGGCTTCCTTCAAGTCCTCCTCTTTCTTGGGCTATAAGGTTCAAAATCTTGCTTGGAACAGCAAAGGGGCTTGCTCATTTGCACCACTCTTTCCGTCCACCGATCATCCACTACAACATAAAGCCAAGTAACATTTTGCTTGACGAAAATTACAACGCCAAGATCTCAGATTTTGGGTTGGCTCGGCTTCTGACAAAGCTTGACCGGCATGTGATGAGCAACAGGTTCCAGAGTGCACTAGGATATGTGGCACCAGAATTAGCATGCCAGAGCTTAAGGGTCAATGAGAAATGTGATGTGTATGGTTTTGGGGTGATGATCCTTGAGCTGGTGACAGGTAGGAGACCAGTGGAGTATGGAGAAGACAATGTGCTGATACTGAATGACCATGTGAGGGTGCTGCTTGAGCAAGGGAATGTGTTGGAGTGTGTGGATCAAAGCATGAGTGAGTATCCTGAAGATGAGGTATTGCCTGTTCTGAAGCTAGCAATGGTATGCACCTCTCAAATTCCTTCTAGCAGGCCTACTATGGCTGAAGTGGTGCAAATACTGCAGGTCATTAAAACCCCAGTTCCTCAAAGGATGGAAGTATTTTGA 3024 0.4246 MTSFQFHLRVLSLLISVSYLLTCLGNNDIPVQLNDDVLGLIVFKSDLNDPSSYLASWNEDDANPCSWQFVQCNPESGRVSEVSLDGLGLSGKIGRGLEKLQHLTVLSLSHNNLSGSISPSLTLSNSLERLNLSHNVLSGSIPTSFVNMNSIKFLDLSENSFSGPMPESFFESCSSLHHISLARNMFDGPVPGSLSRCSSLNSINLSNNHFSGNVDFSGIWSLNRLRTLDLSNNALSGSLPNGISSIHNFKEILLQGNQFSGPLSTDIGFCLHLNRLDFSDNQFSGELPESLGMLSSLSYFKASNNHFNSEFPQWIGNMTSLEYLELSNNQFTGSIPQSIGELRSLTHLSISNNMLVGTIPSSLSFCTKLSVVQLRGNGFNGTIPEGLFGLGLEEIDLSHNELSGSIPPGSSRLLETLTHLDLSDNHLQGNIPAETGLLSKLTHLNLSWNDLHSQMPPEFGLLQNLAVLDLRNSALHGSIPADICDSGNLAVLQLDGNSFEGNIPSEIGNCSSLYLLSLSHNNLTGSIPKSMSKLNKLKILKLEFNELSGEIPMELGMLQSLLAVNISYNRLTGRLPTSSIFQNLDKSSLEGNLGLCSPLLKGPCKMNVPKPLVLDPNAYNNQISPQRQTNESSESGPVHRHRFLSVSAIVAISASFVIVLGVIAVSLLNVSVRRRLTFLDNALESMCSSSSRSGSPATGKLILFDSQSSPDWISNPESLLNKASEIGEGVFGTLYKVPLGSQGRMVAIKKLISTNIIQYPEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVTEFAPNGSLQAKLHERLPSSPPLSWAIRFKILLGTAKGLAHLHHSFRPPIIHYNIKPSNILLDENYNAKISDFGLARLLTKLDRHVMSNRFQSALGYVAPELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEQGNVLECVDQSMSEYPEDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPVPQRMEVF* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2332 1007 Gene3D Ribonuclease Inhibitor 219 335 IPR032675 -
Gso18g2332 1007 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Gso18g2332 1007 Pfam Leucine Rich repeat 439 451 IPR001611 GO:0005515
Gso18g2332 1007 Pfam Leucine rich repeat 368 427 IPR001611 GO:0005515
Gso18g2332 1007 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Gso18g2332 1007 Pfam Leucine rich repeat 488 547 IPR001611 GO:0005515
Gso18g2332 1007 Pfam Leucine rich repeat 303 355 IPR001611 GO:0005515
Gso18g2332 1007 ProSiteProfiles Leucine-rich repeat profile. 416 438 IPR001611 GO:0005515
Gso18g2332 1007 ProSiteProfiles Protein kinase domain profile. 720 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2332 1007 CDD STKc_IRAK 726 994 - -
Gso18g2332 1007 SUPERFAMILY L domain-like 392 598 - -
Gso18g2332 1007 Pfam Protein kinase domain 722 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2332 1007 Gene3D Ribonuclease Inhibitor 336 610 IPR032675 -
Gso18g2332 1007 SUPERFAMILY Protein kinase-like (PK-like) 723 1001 IPR011009 -
Gso18g2332 1007 Gene3D Transferase(Phosphotransferase) domain 1 802 1004 - -
Gso18g2332 1007 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 1005 - -
Gso18g2332 1007 PRINTS Leucine-rich repeat signature 225 238 - -
Gso18g2332 1007 PRINTS Leucine-rich repeat signature 414 427 - -
Gso18g2332 1007 SUPERFAMILY RNI-like 141 452 - -
Gso18g2332 1007 Gene3D Ribonuclease Inhibitor 149 218 IPR032675 -
Gso18g2332 1007 Gene3D Ribonuclease Inhibitor 37 148 IPR032675 -
Gso18g2332 1007 Pfam Leucine Rich Repeat 224 244 IPR001611 GO:0005515
Gso18g2332 1007 ProSitePatterns Protein kinases ATP-binding region signature. 726 750 IPR017441 GO:0005524
Gso18g2332 1007 ProSiteProfiles Leucine-rich repeat profile. 102 124 IPR001611 GO:0005515
Gso18g2332 1007 Gene3D Phosphorylase Kinase; domain 1 720 801 - -
Gso18g2332 1007 SMART LRR_typ_2 222 246 IPR003591 -
Gso18g2332 1007 SMART LRR_typ_2 100 125 IPR003591 -
Gso18g2332 1007 SMART LRR_typ_2 342 366 IPR003591 -
Gso18g2332 1007 SMART LRR_typ_2 462 486 IPR003591 -
Gso18g2332 1007 SMART LRR_typ_2 318 341 IPR003591 -
Gso18g2332 1007 SMART LRR_typ_2 414 437 IPR003591 -
Gso18g2332 1007 SMART LRR_typ_2 558 583 IPR003591 -
Gso18g2332 1007 SMART LRR_typ_2 391 413 IPR003591 -
Gso18g2332 1007 SMART LRR_typ_2 438 461 IPR003591 -
Gso18g2332 1007 PANTHER BNAA09G02190D PROTEIN 10 1005 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2332 Gso-Chr18 56196376 56200323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2332 11 1004 Receptor kinase-like Gene Family AT3G28040 63.048 0.0 1236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Gso18g2332 Pkinase 8.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2332 - - gmx:100813764 1946.01