Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2313 ATGCAATTCGCTAAGCTCGATGACTCTCCTATGTTCCGCAAGCAGATACAATGCATGGAGGAAAGTGCTGAATCTTTAAGAGAGAGAAGTTTAAAATTTTACAAAGGATGTAGAAAATACACTGAAGGACTTGGGGAGGCCTATGATGGAGATATTGCATTTGCAAGTGCCTTGGAAACTTTTGGTGGTGGGCATAATGACCCAATCAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACCATAGCCTTAAGAGAAATTGGGACATATAAGGAAGTCCTTCGATCACAGGTTGAGCACATGTTAAATGACAGATTGCTTCAGTTTGTCAATATTGATTTACAAGAGGTCAAGGAAGCACGGAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAGACTCGTGAAAGGTTTCTGTCACTAAGAAAAGGCACAAAAACTGGTGTAGCTACTGCCCTAGAAGAGGAGCTTCATAGTGCAAGATCTACATTTGAGCAAGCTCGGTTTAATCTGGTTACTGCCTTGTCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCGCATCTTCGTTACTTCAAACAGGGGTATGAATTGTTGCACCAAATGGAGCCATATATTAACCAGGTCTTGACTTATGCTCAACAATCAAGAGAAAGGTCCAATTATGAGCAGGCAGCCCTAAATGAAAGAATGCAAGAGTACAAACGACAGATTGATCGGGAGAGTAGGTGGGCTTCTAATGGTTCTAATGGGTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCCAAGGGAAAGGTTCAAACTATTCGACAAGGTTATCTCTCAAAGCGTTCCTCAAACTTAAGGGGGGACTGGAAAAGGAGATTTTTTGTTCTTGATAGTCGGGGAATGCTGTATTACTACCGTAAACAGTGCAGCAAATCATCTGGGTCTAGTAGTCAACATTCTGGCCAGAGGAATAGTTCTGAGCTTGGTTCTGGACTTTTAAGTCGATGGCTGTCTTCTCATCATCACGGTGGAGTACATGATGAGAAATCTGTTGCTCATCACACTGTGAACTTGCTTACATCAACAATTAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCTACAAAGAACTACACTTTGCAGGCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGATGTTGCCTGCAAGCCCAATGGGAAGTGGTCATCATAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTCTGCTGTTGAAGAATGTGCAGCAGATAGAAGTTTTACTTCTGCGTATCTGGAGCGCCCCTCAAGAAGTTTGCAACAGCAGCGATCCTGCACTAAAAGTGAGAAGCCAATAGATGTACTGCGAAGAGTTTGTGGGAATGATAAATGTGCCGATTGTGGAGCTCCTGAACCTGATTGGGCATCGCTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTCCACATATCAAAGGTCAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTCATAAGTTTATTTCAGTCTCTTGGGAATACTTTTGCCAACTCAGTCTGGGAGGAATTATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGGCTTAAGCAAGTCTGATAAACCAATGATGTTCTTCATCACCAAACCTTGTCAATCTGATTCTCTATCTGTGAAGGAAAAGTTCATCCATGCAAAGTATGCTGAGAAGCTTTTTGTTCGCAAGCCAAAGGACAATCAATACCGTCTCTTAGTAGCACAACAAATCTGGGAGGCTGTTCATGCTAACGATAAAAAAGCTGTATACCGTTACATTGTTAATTCTGATGTTGATGTTAATGCTGTTTATGAGCCAACATGCAGCAGCTCCTTAACCCTTGCCAAAGTAATGCTATTACAAGAGCAGACTAGCCATGATCACAGCTCTACTTTAGCAGGGAACACATTGGACTGGTCCTCCACTAAAGAAGGCCAGGTCATGGACAATCTAGATGGGTGCACCCTACTTCATCTCGCATGTGAAACTGCAGATATTGGCATGGTGGAGCTCCTCCTACAGTATGGTGCAAATGTTAATGCAACTGATTCGAGAGGTCAAACACCTCTACATCGCTGTATTCTCAAAGGAAGATCTACATTTGCAAGATTATTGCTTTCTAGGGGAGCCGATCCTCGAGCTGTGGATGAGCAGGGAAGAACCCCTATTGAGCTTGCTGCTGAGTCAAATGCTGGCGGTGACAGAGAAGTCCATGCTCCATCGACTGATTCTAATGGATGA 2472 0.428 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTRERFLSLRKGTKTGVATALEEELHSARSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPDRMLPASPMGSGHHRSTSESSSFESSDFDHSAVEECAADRSFTSAYLERPSRSLQQQRSCTKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLVPTGLSKSDKPMMFFITKPCQSDSLSVKEKFIHAKYAEKLFVRKPKDNQYRLLVAQQIWEAVHANDKKAVYRYIVNSDVDVNAVYEPTCSSSLTLAKVMLLQEQTSHDHSSTLAGNTLDWSSTKEGQVMDNLDGCTLLHLACETADIGMVELLLQYGANVNATDSRGQTPLHRCILKGRSTFARLLLSRGADPRAVDEQGRTPIELAAESNAGGDREVHAPSTDSNG* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2313 823 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Gso18g2313 823 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Gso18g2313 823 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Gso18g2313 823 CDD ArfGap 503 632 - -
Gso18g2313 823 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Gso18g2313 823 MobiDBLite consensus disorder prediction 447 461 - -
Gso18g2313 823 ProSiteProfiles Ankyrin repeat region circular profile. 729 760 - -
Gso18g2313 823 ProSiteProfiles Ankyrin repeat profile. 729 761 IPR002110 GO:0005515
Gso18g2313 823 SMART ANK_2a 762 791 IPR002110 GO:0005515
Gso18g2313 823 SMART ANK_2a 729 758 IPR002110 GO:0005515
Gso18g2313 823 MobiDBLite consensus disorder prediction 248 270 - -
Gso18g2313 823 CDD PH_ACAP 295 432 - -
Gso18g2313 823 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Gso18g2313 823 Pfam Putative GTPase activating protein for Arf 503 640 IPR001164 GO:0005096
Gso18g2313 823 Gene3D - 285 438 IPR011993 -
Gso18g2313 823 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Gso18g2313 823 MobiDBLite consensus disorder prediction 253 269 - -
Gso18g2313 823 Gene3D Arf GTPase activating protein 481 644 IPR038508 -
Gso18g2313 823 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Gso18g2313 823 SUPERFAMILY Ankyrin repeat 658 807 IPR036770 -
Gso18g2313 823 PANTHER CENTAURIN/ARF 1 811 IPR045258 GO:0005096
Gso18g2313 823 MobiDBLite consensus disorder prediction 789 823 - -
Gso18g2313 823 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 811 - -
Gso18g2313 823 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 645 IPR001164 GO:0005096
Gso18g2313 823 SUPERFAMILY PH domain-like 293 444 - -
Gso18g2313 823 Coils Coil 227 247 - -
Gso18g2313 823 Pfam PH domain 294 427 IPR001849 -
Gso18g2313 823 MobiDBLite consensus disorder prediction 439 461 - -
Gso18g2313 823 SMART arf_gap_3 500 645 IPR001164 GO:0005096
Gso18g2313 823 SUPERFAMILY ArfGap/RecO-like zinc finger 500 640 IPR037278 -
Gso18g2313 823 Pfam Ankyrin repeats (many copies) 749 803 IPR002110 GO:0005515
Gso18g2313 823 ProSiteProfiles Ankyrin repeat profile. 762 794 IPR002110 GO:0005515
Gso18g2313 823 ProSiteProfiles Ankyrin repeat region circular profile. 762 794 - -
Gso18g2313 823 CDD BAR_SFC_plant 14 215 IPR035670 -
Gso18g2313 823 Gene3D - 645 810 IPR036770 -
Gso18g2313 823 SMART PH_update 293 430 IPR001849 -
Gso18g2313 823 Pfam BAR domain of APPL family 6 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2313 Gso-Chr18 56007562 56017206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2313 512 639 C2H2 Transcription Factor Family AT4G21160 41.860 2.44e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2313 K12489 - gmx:100789134 1567.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2313 18 56007562 56017206 Gso8g2131 8 23338377 23348409 GST