Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2305 ATGTCTGAAATGGTTTCTGCTCTTGCTCAAGTTATGGGAACTACCAATCGGAACCCATACATGCCACAATCAACCTCCTTTCCTTTCTCAACTTCCGTGGTCAAAGATCAACCTCAACCATACCCATCTCAACCTCCTCCAGATCAAGAGGTGACAAAGAAGCCACACTACAGAGGAGTGAGGCAGAGACCATGGGGGAAATGGGCAGCAGAAATCCGTGACCCAAAAAAAGCAGCCAGAGTGTGGCTAGGAACCTTTGAAACAGCAGAGGATGCAGCACTTGCATATGACAAAGCAGCACTCAAGTTCAAAGGCACAAAAGCTAAGCTCAATTTCCCTGAAAGAGTTCATCAAGATGTTCCCTTTATGCAACAACACCAACAACGTTCATCAAACAGAAACGTTTTTCCCATCCATGCAACTTCCACCACTAGTAGTGCTACTGGGTCTGTTTCTTCTGTTGATGCTGTTGCTCCTCCTTCGTTGTCCACTCATGATCAACATGGCCACCAAGTTTTCCCAAATCTGTATCAATATGCACAGATTCTTTCAAGTGATGATGCACAGTTACCTTATTTCACATCCCATCTTTTCAATCAACAACAACAACAGCAACAGCAACAACCTTTCAATTCTCAATTCTCTAGCACTTTTTCTTCAACCTCATCCTACTTCTACAACCAGCAACAACAATATGATCAACAAGGACATGATCACTCAAACCACTAG 729 0.4348 MSEMVSALAQVMGTTNRNPYMPQSTSFPFSTSVVKDQPQPYPSQPPPDQEVTKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDKAALKFKGTKAKLNFPERVHQDVPFMQQHQQRSSNRNVFPIHATSTTSSATGSVSSVDAVAPPSLSTHDQHGHQVFPNLYQYAQILSSDDAQLPYFTSHLFNQQQQQQQQQPFNSQFSSTFSSTSSYFYNQQQQYDQQGHDHSNH* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2305 242 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Gso18g2305 242 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Gso18g2305 242 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677
Gso18g2305 242 Gene3D AP2/ERF domain 56 115 IPR036955 GO:0003700|GO:0006355
Gso18g2305 242 MobiDBLite consensus disorder prediction 143 167 - -
Gso18g2305 242 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Gso18g2305 242 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
Gso18g2305 242 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Gso18g2305 242 PANTHER DNA-BINDING DOMAIN 29 233 IPR044808 GO:0003700|GO:0009873
Gso18g2305 242 MobiDBLite consensus disorder prediction 14 38 - -
Gso18g2305 242 MobiDBLite consensus disorder prediction 14 60 - -
Gso18g2305 242 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 29 233 - -
Gso18g2305 242 CDD AP2 55 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2305 Gso-Chr18 55930135 55934188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2305 4 198 AP2-EREBP Transcription Factor Family AT5G13330 46.040 1.19e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso18g2305 AP2 5.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2305 - - gmx:100500531 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2305 18 55930135 55934188 Gso8g2128 8 23280682 23283643 GST