Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2298 ATGTTCCCTTCCACTAATTACACCTCCTCAGGCTCTTACCCTCGTTTCCCTTCATCTTCTTCTTCCACTTCACCCTATCCTTCTTTTACTCTCCTTCATCCTGAAAATTCTTCTTCCAGCAACAACACCTTTCTTCATGATCCACTTGCTCTTACCTACATACCCTCTCATTACCATGCTCCAATCCCAGAAACACTAGCCAATTGGGCAGTTGCAGATTGTGCAATACTGAATCAGGATCTAGGTGGTGCCCTTTATGGCATCACCAAGAAACCAATGAAGAAAGCAACTAAGAAAGACAGGCACAGCAAGATTCATACTTCTCAGGGTTTGAGGGACAGAAGGGTTAGGCTTTCCATTGAGATCGCACGCAAGTTCTTTGATCTTCAAGATATGTTAGGGTTTGACAAAGCCAGCAACACCCTTGACTGGCTCTTCACAAAGTCCAAGAAGGCAATTAAGGAGCTTACTCGAAGCAAGCACAGTGTTGAAAGCTTCGAGTTCTCCTCATCTTCTGAGGGTGAAGTAGTTTCTACTATCCAGCAACAAGACCTACAACAACAACATGGGATAAATTTGGAAAATGGGAAGTTGAAAGAACCTGCAGCTTATTGTGTTAAAGCAAAGATGAAGGAATCAAGGGAAAAAGCAAGGGCAAGAGCAAGGGAAAAGACTAGTAGCAAGGTATTGTGCAACACAAGTGGCGAAGGGAAGGTGCAAGAGTTGAAGAAAAAGTGCCCTGCAACTGAAAACCCTCAAATCCTGAACCAGTTAAGGTCAACCCTTCAACCTCCTCATCCTCAAAATGTGGGTGGAGAAGTGCCAAGAGATGATGACTTCAACGTTATTGAGGAATCCATTGTCATCAGAAGAAAGTTGAAACACACTTTGATGTCTTCCAATATTCATCATCAAAACGCTGTGATCCCTAAGGAAGCAAGTGTAAACAACAGTGACTACCACTCCTTCCCCAATTTGTCTCCAAATTGGGAAGCTAATAATGGTGCCAATGGACGCTCCACCTTTTGTGCAATAGCCAGCATGAATCTGTCTACAGGGCTTCAAATTTTTGGAAAATCTTGGGAGGAGTGCACCAATCCTCATCCAAGCTAA 1113 0.4349 MFPSTNYTSSGSYPRFPSSSSSTSPYPSFTLLHPENSSSSNNTFLHDPLALTYIPSHYHAPIPETLANWAVADCAILNQDLGGALYGITKKPMKKATKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSVESFEFSSSSEGEVVSTIQQQDLQQQHGINLENGKLKEPAAYCVKAKMKESREKARARAREKTSSKVLCNTSGEGKVQELKKKCPATENPQILNQLRSTLQPPHPQNVGGEVPRDDDFNVIEESIVIRRKLKHTLMSSNIHHQNAVIPKEASVNNSDYHSFPNLSPNWEANNGANGRSTFCAIASMNLSTGLQIFGKSWEECTNPHPS* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2298 370 ProSiteProfiles TCP domain profile. 98 156 IPR017887 -
Gso18g2298 370 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 8 369 IPR005333 GO:0003700
Gso18g2298 370 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 8 369 - -
Gso18g2298 370 ProSiteProfiles R domain profile. 211 228 IPR017888 -
Gso18g2298 370 MobiDBLite consensus disorder prediction 1 21 - -
Gso18g2298 370 Pfam TCP family transcription factor 97 228 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2298 Gso-Chr18 55871810 55873772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2298 44 270 TCP Transcription Factor Family AT1G67260 37.288 1.49e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso18g2298 TCP 9e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2298 - - gmx:100786452 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2298 18 55871810 55873772 Gso8g2119 8 23093690 23095565 GST