Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2279 ATGGGGACTCAAAGAGGAATAGCTCTTCTCAGTTTCACATTCTTCTTGTTGTTGAGCTCAGCAAATGCTTTGCTTTCTCCTAAGGGAGTGAACTTTGAAGTGCAAGCCTTAATGGGCATAAAAGATTCTTTAGAGGATCCACATGGTGTTCTAGATAATTGGGATGGGGATGCAGTTGATCCATGTAGCTGGACTATGGTCACTTGTTCTTCTGAAAACTTGGTCATTGGACTGGGCACTCCAAGTCAAAGTTTATCTGGTACTCTATCTCCAAGCATAGGCAACTTAACCAACCTTCAGATTGTGCTGCTACAGAATAACAACATAAGTGGACCAATCCCTTCAGAGTTAGGCAAACTTTCAAGGCTTCAAACGCTTGATCTCTCTAACAACTTCTTCAGTGGGGGGATTCCTCCCTCTCTTGGTCACCTAAGAAGCCTCCAGTACCTGAGATTCAATAATAACAGTCTTGTTGGTGAATGCCCAGAGTCACTGGCTAACATGACTCAGCTTAATTTTCTTGATTTGTCATACAACAATCTTAGTGGTCCGGTGCCTAGAATTTTAGCCAAATCATTCAGCATTATTGGAAACCCCCTTGTTTGTGCCACGGGAAAAGAGCCAAACTGCCATGGGATGACATTGATGCCTATGTCCATGAACTTAAACAACACTGAAGATGCTTTACAATCAGGCAGACCAAAAACTCATAAAATGGCAATTGCCTTTGGCTTGAGTTTGGGATGTCTCTGCCTCATAGTTCTTGGTTTTGGACTTGTTCTTTGGTGGAGGCACAAACACAATCAACAAGCATTCTTTGATGTTAAAGACCGGCACCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCAATTCAGAGAACTCCAGATTGCTACTAACAACTTCAGCAGCAAAAACATACTGGGAAAGGGTGGTTTTGGAAATGTCTACAAAGGAGTTTTCCCTGATGGCACTCTTGTGGCTGTCAAGAGGCTTAAAGATGGTAATGCCATTGGAGGAGAGATTCAATTTCAGACCGAAGTTGAAATGATCAGCCTAGCAGTGCACCGAAACCTCCTCAGACTGTATGGATTTTGCATGACACCAACGGAAAGGCTCTTGGTTTATCCATACATGTCCAATGGCAGTGTTGCTTCCCGTCTCAAGGGTAAGCCAGTGCTGGACTGGGGCACAAGGAAGCACATTGCTTTAGGAGCAGGAAGAGGACTACTTTACCTTCATGAGCAGTGTGATCCAAAGATAATCCATAGGGATGTGAAAGCTGCCAACATATTGCTTGATGACTATTATGAAGCTGTAGTTGGAGATTTTGGGTTGGCAAAGCTTTTGGATCACCAAGATTCACATGTCACAACTGCAGTGAGGGGCACTGTGGGGCATATTGCCCCAGAGTACTTATCCACAGGACAATCCTCTGAGAAGACTGATGTTTTTGGATTTGGCATTCTCCTCCTTGAATTGATCACAGGCCAAAGGGCTCTAGAGTTTGGAAAATCAGCTAACAACAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCAGGAGAAAAAGCTTGATATGCTAGTAGACAAGGATCTCAAGAACAACTATGACAGAATTGAGCTTGAGGAAATGGTTCAAGTGGCTCTCTTGTGTACTCAATATCTTCCCGGCCATAGACCAAAAATGTCTGAAGTGGTACGCATGCTTGAAGGTGATGGACTAGCAGAAAAATGGGAAGCTTCTCAAAGAGTTGACACAACAAAGTGCAAACCACAAGAGTCCTCTTCATCAGATAGGTATTCTGATCTCACTGATGACTCTTTGTTGTTAGTCCAAGCCATGGAACTCTCAGGACCCAGGTGA 1872 0.4348 MGTQRGIALLSFTFFLLLSSANALLSPKGVNFEVQALMGIKDSLEDPHGVLDNWDGDAVDPCSWTMVTCSSENLVIGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNISGPIPSELGKLSRLQTLDLSNNFFSGGIPPSLGHLRSLQYLRFNNNSLVGECPESLANMTQLNFLDLSYNNLSGPVPRILAKSFSIIGNPLVCATGKEPNCHGMTLMPMSMNLNNTEDALQSGRPKTHKMAIAFGLSLGCLCLIVLGFGLVLWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQIATNNFSSKNILGKGGFGNVYKGVFPDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKHIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYYEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKSANNKGAMLDWVKKIHQEKKLDMLVDKDLKNNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASQRVDTTKCKPQESSSSDRYSDLTDDSLLLVQAMELSGPR* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2279 623 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Gso18g2279 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Gso18g2279 623 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 4 623 - -
Gso18g2279 623 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Gso18g2279 623 SMART serkin_6 303 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2279 623 MobiDBLite consensus disorder prediction 590 606 - -
Gso18g2279 623 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Gso18g2279 623 Pfam Leucine Rich Repeat 122 144 IPR001611 GO:0005515
Gso18g2279 623 MobiDBLite consensus disorder prediction 583 606 - -
Gso18g2279 623 Gene3D Transferase(Phosphotransferase) domain 1 380 592 - -
Gso18g2279 623 SUPERFAMILY Protein kinase-like (PK-like) 280 573 IPR011009 -
Gso18g2279 623 ProSiteProfiles Protein kinase domain profile. 303 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2279 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 623 - -
Gso18g2279 623 Pfam Protein kinase domain 304 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2279 623 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Gso18g2279 623 SUPERFAMILY L domain-like 33 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2279 Gso-Chr18 55681273 55685368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2279 1 623 Receptor kinase-like Gene Family AT5G16000 78.730 0.0 1003
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gso18g2279 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2279 - - gmx:100797768 1219.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2279 18 55681273 55685368 Gso8g2101 8 22751683 22755820 GST
Gso13g0325 13 14611856 14616272 Gso18g2279 18 55681273 55685368 PCT
Gso19g0342 19 5605297 5609731 Gso18g2279 18 55681273 55685368 PCT
Gso18g2279 18 55681273 55685368 Gso13g0325 13 14611856 14616272 PCT
Gso18g2279 18 55681273 55685368 Gso19g0342 19 5605297 5609731 PCT