Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2278 ATGTTGGAGGGCCAAGCAACAACGCCCACGTGGCCGCGCATGTGCGACACGTGCCGCTCCGTCCCCTCCACCGTCTTCTGCCGCTCCCACACCGCCTTTCTCTGCGCCACGTGCGACACTCGCCTCCACGTCTCGCTCACGTGGCACGAGCGCGTGTGGGTGTGCGAGGCGTGCGAGCGCGCCCCGGCGGCGTTCCTCTGCAAGGCCGACGCCGCCTCCCTCTGCGCCTCCTGCGACGCCGACATCCACGCCGCCAACCCCCTCGCCAGCCGCCACCACCGCGTCCCCATCCTCCCCATCGCCGCCGCCAACAACAACAACAACGACGACGACGACGTTGCTGACATTGACGACGAAGACGAAACCGCTTCATGGCTCTTGCTCAACCCTATCAAGAGTGCTACTGTCCCTAACACCAATAACAATAACAATAATAACGGGTTCTTGTATAACGCTGCTGCTACTACTGATCATTACGCTCAGCACCAACATTTCGCTGGTGTTTCTCAGAAGAGTTATGCTGGGGACAGTGTTGTTCCGGTTCAGCAACACCAGCATTTTCAGCTTGGGTTGGAGTTTGACAACTCCAAACCTGCCTTCAGTTACAATGGTTCTGTTAGTCAAAGTGTTTCAGTTTCATCAATGGATATTGGTGTTGTACCTGAATCACCAATGAGGGATGTCTCAATTGCCCATACAAGACCCCCCAAAGGGACAATTGACCTATTTTCTGGACCTCCAATTCAGGTGCCTTCCCATTTTTCTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTACAGGGAGAAAAAGAAGATGAGAAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCTCGTATAAAAGGTCGATTTGCCAAGAGAACAGATGTAGAAGCTGAAGTGGATCAGATGTTCTCGACAACACTAATTACAGAAGTTGGATATGGAATTGTTCCCTCTTTCTGA 987 0.5309 MLEGQATTPTWPRMCDTCRSVPSTVFCRSHTAFLCATCDTRLHVSLTWHERVWVCEACERAPAAFLCKADAASLCASCDADIHAANPLASRHHRVPILPIAAANNNNNDDDDVADIDDEDETASWLLLNPIKSATVPNTNNNNNNNGFLYNAAATTDHYAQHQHFAGVSQKSYAGDSVVPVQQHQHFQLGLEFDNSKPAFSYNGSVSQSVSVSSMDIGVVPESPMRDVSIAHTRPPKGTIDLFSGPPIQVPSHFSPMDREARVLRYREKKKMRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2278 328 CDD Bbox1 14 43 - -
Gso18g2278 328 ProSiteProfiles Zinc finger B-box type profile. 10 54 IPR000315 GO:0008270
Gso18g2278 328 Pfam B-box zinc finger 52 97 IPR000315 GO:0008270
Gso18g2278 328 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 11 328 IPR045281 GO:0009909
Gso18g2278 328 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 11 328 - -
Gso18g2278 328 Pfam CCT motif 259 301 IPR010402 GO:0005515
Gso18g2278 328 SMART bboxneu5 50 97 IPR000315 GO:0008270
Gso18g2278 328 SMART bboxneu5 10 47 IPR000315 GO:0008270
Gso18g2278 328 CDD Bbox1_BBX-like 54 97 - -
Gso18g2278 328 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Gso18g2278 328 ProSiteProfiles CCT domain profile. 259 301 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2278 Gso-Chr18 55665227 55667887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2278 1 328 C2C2-CO-like Transcription Factor Family AT3G02380 51.821 1.61e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso18g2278 zf-B_box 7.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2278 - - gmx:100301886 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2278 18 55665227 55667887 Gso8g2100 8 22701621 22704271 GST
Gso13g0327 13 14633759 14636001 Gso18g2278 18 55665227 55667887 PCT
Gso19g0341 19 5537313 5539642 Gso18g2278 18 55665227 55667887 PCT
Gso18g2278 18 55665227 55667887 Gso13g0327 13 14633759 14636001 PCT
Gso18g2278 18 55665227 55667887 Gso19g0341 19 5537313 5539642 PCT