Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2258 ATGGTTGATCAAGCTGATTTAGTTATCATTTGTGTCTCTGTTGGGGTGGCCCTTGGAGTTTTGATAGCTTATCTCATATATGTTGGCATAAGGTGGTACAAAAAGCGAGCTCATCTTAGCCGATCTGCGAACGAGCCTAGTTTAACAACTATCCCTATACGAACAAATGGATTAGAAACTAGCATTGACTTTAGTGCTTCTCTCACCAGTTCCATAGCCACTTCAAGGTCACCAAATCCTCACAAAAGCTCGCATTCAACTTGGTGGAGTCATCAGAATAAAGATGGTTTTGCTTCAGTATCAGGCATTCTGAAGTACTCATATAAAGAAATTCAAAAGGCTACACAAAACTTCACAAATACTTTGGGAGAAGGATCCTTTGGCACAGTTTATAAAGCCATGATGCCTACAGGAGAGGTGGTAGCTGTGAAGATGCTTGGACCCAATTCCAAACAAGGGGAGAAAGAATTTCAAACAGAGGTGCTTCTGCTTGGAAGACTGCATCATCGGAATCTTGTAAATTTGTTAGGATACTGCATAGATAAAGGACAGTTTATGCTGGTTTACGAGTTCATGAGTAATGGAAGTTTAGAAAACCTTTTATATGGTGAAGAAAAGGAACTGAGTTGGGATGAAAGGCTGCAAATTGCTGTTGATATTTCACACGGAATAGAATACCTTCATGAAGGGGCAGTCCCACCCGTTGTTCATCGTGATTTGAAATCTGCTAATATATTGCTTGATCACTCAATGAGAGCTAAGGTTTCTGATTTTGGGCTCTCAAAGGAAGAGGTCTTTGATGGCCGTAATTCTGGCCTTAAAGGTACATATGGGTACATGGACCCTGCATACATTTCCTCAAGCAAGTTCACAGTGAAGAGTGACATTTACAGTTTTGGTATAATAATTTTTGAGCTGATCACTGCCATCCACCCACATCAAAATTTGATGGAATATATCCATCTTGCTGCAATGGATTATGATGGTGTAGATGGGATTCTTGACAAGCAACTTGTGGGAAAATGCAATCTTGAAGAAGTGAGACAGCTTGCTAAAATTGCACACAAATGTTTGCACAAATCACCTAGGAAACGCCCATCCATTGGTGAGGTTTCGCAGGGTATATTGAGGATTAAGCAAAGACGCCTCATGAAAGAAGACACCATGTCATTTGCAAGCAGCAACTTCTCCCGAAGTGTGAGTCAAATAGAGGAGCAACAGGTTGAATTAAGTAAAATAACCACCATGAACCACAGGGAAATGGGGTGA 1269 0.4082 MVDQADLVIICVSVGVALGVLIAYLIYVGIRWYKKRAHLSRSANEPSLTTIPIRTNGLETSIDFSASLTSSIATSRSPNPHKSSHSTWWSHQNKDGFASVSGILKYSYKEIQKATQNFTNTLGEGSFGTVYKAMMPTGEVVAVKMLGPNSKQGEKEFQTEVLLLGRLHHRNLVNLLGYCIDKGQFMLVYEFMSNGSLENLLYGEEKELSWDERLQIAVDISHGIEYLHEGAVPPVVHRDLKSANILLDHSMRAKVSDFGLSKEEVFDGRNSGLKGTYGYMDPAYISSSKFTVKSDIYSFGIIIFELITAIHPHQNLMEYIHLAAMDYDGVDGILDKQLVGKCNLEEVRQLAKIAHKCLHKSPRKRPSIGEVSQGILRIKQRRLMKEDTMSFASSNFSRSVSQIEEQQVELSKITTMNHREMG* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2258 422 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Gso18g2258 422 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 419 - -
Gso18g2258 422 Pfam Protein tyrosine and serine/threonine kinase 118 372 IPR001245 GO:0004672|GO:0006468
Gso18g2258 422 Gene3D Phosphorylase Kinase; domain 1 81 191 - -
Gso18g2258 422 CDD STKc_IRAK 122 378 - -
Gso18g2258 422 Gene3D Transferase(Phosphotransferase) domain 1 192 400 - -
Gso18g2258 422 ProSiteProfiles Protein kinase domain profile. 116 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2258 422 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2258 422 SUPERFAMILY Protein kinase-like (PK-like) 85 372 IPR011009 -
Gso18g2258 422 PANTHER OS01G0750732 PROTEIN 9 419 - -
Gso18g2258 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2258 Gso-Chr18 55487677 55492650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2258 76 398 Receptor kinase-like Gene Family AT4G02010 38.682 6.34e-70 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Gso18g2258 PK_Tyr_Ser-Thr 9.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2258 - - gmx:100794239 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2258 18 55487677 55492650 Gso8g2083 8 22350639 22355735 GST
Gso18g2258 18 55487677 55492650 Gso19g0324 19 5132239 5138226 PCT