Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2255 ATGGCTAGGTCTGCGAAAGGGCATCAAGATGAATTCGACGACGATGATGAAGAAGAACTCTTAACTGCTAATAACACCTCTTCCAAAGTGAAGGTGGATGAACCCAGCACGGGGAAGAGGGTGAACCCACAGCGTTCAAAGCATTCAGAAACCGAGCAACGTAGAAGGAGCAAGATTAACGAAAGGTTTCAGGTTCTGAGAGATCTCATACCTCAAAATGATCAAAAAAGAGATAAGGCATCCTTCTTGTTGGAGGTCATTGAGTATATTCAGTTCCTACAGGAAAAATTACAAATTTATGAACAGACTTATGAAGGATGGAATCAGGAGCCCACGAAATTAACTCCATGGAGAAATAATCACGGGCCTGCAGAAAATACTACAGATCCTTCTCAAGCTACTCAAAATGGGTCTGTTGATGAGAAAAATAACAATGTCTCTCCATTGTTGCCCAAAAATGTACAGAACCCGATAGAGTCTGACTTCTCAATGACAACTATTCAGAAGGGCAACATCCCTGGTTCAACTACAGAAGCAGTTCCCCTGCCCATGCAAATGCGATTGGACATGTTTGATCCAGTTGTTAGCAGTAGTATGGCAACCCAACATCTGCTGGAACCTGTATCTAATGTTAACATGCTTTCCCATACCCAGCCTCAATTGTGGCTTGATAAACGAAACAAGGGCAACTATATTCTTCCACATAATGATACAATGAAGGAACAGGAGGAGCTGGTGAATGAAAGTGGGTCAGATAGCATCTCAAGTGCCTATTCTCAGGGAATTTTAGATTCTCTCACACAAGCACTGCACTCTTCAGGCGTAGATATGTCCCAGACTAATGTCTCAGTGCAAATTGATGTTGGTAGACAAGAAAATGCTGGGCTGATCCCCTCTGCATCTACTTCAAAGGGTCATGAAAACCAATCTGTGAGCAATCCAGCAATAGCACGTTCCGGAGTTGATTACTGCAATATTGATTCTGAACAAAGTTCAAAGAGGCTCAGACAAGAAGCAAGCTAG 1023 0.4272 MARSAKGHQDEFDDDDEEELLTANNTSSKVKVDEPSTGKRVNPQRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQTYEGWNQEPTKLTPWRNNHGPAENTTDPSQATQNGSVDEKNNNVSPLLPKNVQNPIESDFSMTTIQKGNIPGSTTEAVPLPMQMRLDMFDPVVSSSMATQHLLEPVSNVNMLSHTQPQLWLDKRNKGNYILPHNDTMKEQEELVNESGSDSISSAYSQGILDSLTQALHSSGVDMSQTNVSVQIDVGRQENAGLIPSASTSKGHENQSVSNPAIARSGVDYCNIDSEQSSKRLRQEAS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2255 340 Pfam Helix-loop-helix DNA-binding domain 44 94 IPR011598 GO:0046983
Gso18g2255 340 MobiDBLite consensus disorder prediction 296 316 - -
Gso18g2255 340 CDD bHLH_AtBIM_like 45 118 - -
Gso18g2255 340 MobiDBLite consensus disorder prediction 296 319 - -
Gso18g2255 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 121 IPR036638 GO:0046983
Gso18g2255 340 Gene3D - 42 115 IPR036638 GO:0046983
Gso18g2255 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 93 IPR011598 GO:0046983
Gso18g2255 340 SMART finulus 49 99 IPR011598 GO:0046983
Gso18g2255 340 MobiDBLite consensus disorder prediction 110 153 - -
Gso18g2255 340 PANTHER TRANSCRIPTION FACTOR BIM3 1 339 - -
Gso18g2255 340 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 339 IPR044295 GO:0003700|GO:0006351|GO:0046983
Gso18g2255 340 MobiDBLite consensus disorder prediction 33 59 - -
Gso18g2255 340 Coils Coil 90 110 - -
Gso18g2255 340 MobiDBLite consensus disorder prediction 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2255 Gso-Chr18 55462196 55466416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2255 3 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 40.741 2.98e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso18g2255 HLH 8.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2255 - - gmx:100792653 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2255 18 55462196 55466416 Gso8g2079 8 22297932 22301512 GST