Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2243 ATGGGTGCTGTTTGTTGCTGTTTCAATGTTGATGATTTTGAAGATTTTATGAATCCAAATAGTTCTGTATATAGGAACTGTATGTGTCTCAGTTGCTTTGTACAGAACTTTTTCACTATGTATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATACAGGGCGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCCTGCCTTATGATGCAGACAGGTTTTTCCGTTCACAGCGTGATGGACTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATGCTGACTCAGAATCTTTAAATTCTGCTGGTAAATGGAATGATACCAGTGAAGATGGATCAAAGGAATACCGTTCTAAGTCCACTGTAAGGCTCTCATCAGCAAAACTTACAACTGGAGCTGGGGTTGTCTATTCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTTGTTGTATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAGGTGATGGTATTTGATGAAACGACTGATTGA 681 0.4068 MGAVCCCFNVDDFEDFMNPNSSVYRNCMCLSCFVQNFFTMYESIFRRGEVHAIPSSIQGAASMTSTASLDNSLSDMYRSPPRPLPYDADRFFRSQRDGLVSRREKGSSHLNEESEPLRGDVDADSESLNSAGKWNDTSEDGSKEYRSKSTVRLSSAKLTTGAGVVYSSSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLCCIYEWMERSDNCPVCGKVMVFDETTD* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2243 226 MobiDBLite consensus disorder prediction 100 122 - -
Gso18g2243 226 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
Gso18g2243 226 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 224 - -
Gso18g2243 226 Pfam RING-H2 zinc finger domain 169 215 IPR024766 GO:0008270
Gso18g2243 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 222 IPR013083 -
Gso18g2243 226 MobiDBLite consensus disorder prediction 100 150 - -
Gso18g2243 226 SUPERFAMILY RING/U-box 170 222 - -
Gso18g2243 226 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 224 - -
Gso18g2243 226 SMART ring_2 175 215 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2243 Gso-Chr18 55358090 55364377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2243 1 224 C3H Transcription Factor Family AT5G15790 58.874 7.36e-93 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2243 - - gmx:100790543 475.322