Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2239 ATGTACTTATTCCTTAACCCTCCTGTTACCCTTTTTAGCTATTTCTATTTGTGCTGCTTTCATAGAATTGCTAGTTACGTGGGAGAATTAAGCACTAAGAAGATGGGAAGGGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAAACAAGCCAGCAAGTGACGTTTTTCAAGCGTAGATCGGGACTTCTCAAGAAAGCCAGCGAAATCTCTGTGCTATGTGATGCTCAAGTTGCTTTGATTATATTTTCTACCAAAGGCAAACTTTTTGAGTATTCCTCTGAACGCAGCATGGAAGACCTCCTTGAACGTTACGAGAGATGTAGCCATACAGCACTTGCTGGAGCTAACAATGTCGAATCACCGGGATTTTGGTCTTTCGAACATATCAAGCTCACCGCTAAAGTTGAAGTCTTGGAGAGGAACATAATGAATTTCTTTGGAAATGATCTGGATCCCTTGAGTTTGAAAGAGCTTCACAGTTTGGAGCAGCAGATTGAGACATCTCTGAAGCGCATCCGAACTAGAAAGAATCAAGTTATGAATCAATCCGTCTCAGACCTGCATAAAAAGGCAAGGACATTACAAGTGCAAAACAGATGGCTAGGAAAGATGAAGGAGAAAGCGAAGACAGTGACTGAAGGTCCACACAACGGCCCAGAAACTCTAGGCTTTGATTCATCCACACTCAACTTATCTTCTCCACAGCTACCACCACCACCATCACCACAAAGACTGGTTCCTTCTCTAACTCTCAGTGAGACAATGCAAGGAGGAACACCAGTGGAAGAAACGGGTGAGGCTCAAACAGTCCCTAGTGGCAATTCTCTCATCCCACCATGGATGCTGCGCTGCATGTCTGACTAG 864 0.4444 MYLFLNPPVTLFSYFYLCCFHRIASYVGELSTKKMGRGRVQLKRIENKTSQQVTFFKRRSGLLKKASEISVLCDAQVALIIFSTKGKLFEYSSERSMEDLLERYERCSHTALAGANNVESPGFWSFEHIKLTAKVEVLERNIMNFFGNDLDPLSLKELHSLEQQIETSLKRIRTRKNQVMNQSVSDLHKKARTLQVQNRWLGKMKEKAKTVTEGPHNGPETLGFDSSTLNLSSPQLPPPPSPQRLVPSLTLSETMQGGTPVEETGEAQTVPSGNSLIPPWMLRCMSD* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2239 287 MobiDBLite consensus disorder prediction 246 275 - -
Gso18g2239 287 CDD MADS_MEF2_like 36 109 IPR033896 GO:0000977|GO:0045944
Gso18g2239 287 MobiDBLite consensus disorder prediction 207 276 - -
Gso18g2239 287 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 44 91 IPR002100 GO:0003677|GO:0046983
Gso18g2239 287 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN FUL-L 35 258 - -
Gso18g2239 287 PRINTS MADS domain signature 37 57 IPR002100 GO:0003677|GO:0046983
Gso18g2239 287 PRINTS MADS domain signature 57 72 IPR002100 GO:0003677|GO:0046983
Gso18g2239 287 PRINTS MADS domain signature 72 93 IPR002100 GO:0003677|GO:0046983
Gso18g2239 287 SUPERFAMILY SRF-like 36 112 IPR036879 GO:0003677|GO:0046983
Gso18g2239 287 Gene3D - 47 117 IPR036879 GO:0003677|GO:0046983
Gso18g2239 287 SMART madsneu2 35 94 IPR002100 GO:0003677|GO:0046983
Gso18g2239 287 PANTHER MADS BOX PROTEIN 35 258 - -
Gso18g2239 287 ProSiteProfiles K-box domain profile. 121 211 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso18g2239 287 Pfam K-box region 123 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso18g2239 287 ProSiteProfiles MADS-box domain profile. 35 95 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2239 Gso-Chr18 55330515 55338827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2239 35 239 MADS-box Gene Family AT1G26310 52.632 1.77e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso18g2239 K-box 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2239 K09264 - gmx:100788956 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2239 18 55330515 55338827 Gso8g2062 8 22028804 22041050 GST
Gso13g0344 13 14899479 14921412 Gso18g2239 18 55330515 55338827 PCT
Gso18g2239 18 55330515 55338827 Gso19g0304 19 4546777 4564134 PCT