Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2238 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACTTTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGAGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGCATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGCTATGGTGCTGTGGAAGTTAGCAAACCTGCCAAAGAGCTCGAGCAGAGCAGCTACCGTGAATACTTGAAGCTGAAAGCAAGATTTGAATCACTTCAAAGGACCCAAAGAAACCTTTTAGGGGAAGACTTAGGCCCACTGAATATCAAAGAACTTGAGCATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAGACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACCAAGGAGCAGATGTTAGTAGAAGCAAACAGATCCTTGACAGTGAAGCTGGAAGAAATCAATTCAAGAAACCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCCATATGGTGGTGGTGGTCCAGAGAATTCTCACTCTCATTCTCACTCTCAGGGCTTCTTCCAACCATTGGAATGCAACCCTACACTACATATTGGTCCTGATTACAGGTACAATGCTGTAGCTTCAGATCAGATAACTGCCACAACTCAACCTCAACAAGTGAGTGGCTTTATTCCAGGGTGGATGCTTTGA 768 0.4453 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELEQSSYREYLKLKARFESLQRTQRNLLGEDLGPLNIKELEHLERQLDSSLKQVRSTKTQFMLDQLSDLQTKEQMLVEANRSLTVKLEEINSRNHYRQSWEAGDQSMPYGGGGPENSHSHSHSQGFFQPLECNPTLHIGPDYRYNAVASDQITATTQPQQVSGFIPGWML* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2238 255 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Gso18g2238 255 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso18g2238 255 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso18g2238 255 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso18g2238 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso18g2238 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso18g2238 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso18g2238 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso18g2238 255 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gso18g2238 255 MobiDBLite consensus disorder prediction 181 211 - -
Gso18g2238 255 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso18g2238 255 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Gso18g2238 255 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso18g2238 255 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 242 - -
Gso18g2238 255 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 242 - -
Gso18g2238 255 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2238 Gso-Chr18 55311800 55317831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2238 1 255 MADS-box Gene Family AT5G15800 71.111 2.62e-119 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso18g2238 K-box 8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2238 K09264 - gmx:100788427 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2238 18 55311800 55317831 Gso8g2061 8 22011937 22017546 GST
Gso13g0348 13 14958204 14964121 Gso18g2238 18 55311800 55317831 PCT
Gso19g0303 19 4523330 4529738 Gso18g2238 18 55311800 55317831 PCT
Gso18g2238 18 55311800 55317831 Gso13g0348 13 14958204 14964121 PCT
Gso18g2238 18 55311800 55317831 Gso19g0303 19 4523330 4529738 PCT