Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2236 ATGGTAGCTATGAAGGGTTCACTTGCAACGCAGAAAGAGTGGAGGAAAGGCCCTTGGATTGGTGAAGAGGATAAGTTGCTATGTGAGTATGTTAGCTTGCATGGAGAAGGTAGGTGGAGTTCGGTGGCAAAGCTTACAGGATTAAACAGGAGCGGCAAAAGCTGCAGGTTAAGATGGGTAAATTATTTGAGACCCGGCCTCAAGAAAGCTCAATTAACACCTCGGGAAGAAGAGATGATTATTGAACTGCATGCAATCTTGGGTAACAAGTGGTCTACAATCGCAAAGTACTTGCCAGGTAGAACTGATAACGAAATTAAGAACTACTGGAGAACCCACTCTGGGAAGAGGGAGAGATCCAAACACAACAAGAAGCTACAAAGGCCAAAAGTGAAAAACGTGCTTAAACAATTGAAACAAAAACAACAACATGAGCAACAACCTCAAGAATATGATATCAAAAGCAGCATGTCTCATGAAGAGACCGAAAACGAAACAAAATCCTTCCACACACAAAATAATAATCAGCAAGAAATCTTAGAAATGGGCTTCATGTATCCAACAACAATAGAGCACCAATATACCGTTCCTTCCATGCATGACGGATTCTCGTCCACGTGGCAAGACACTCTAGCGGATGATGGCTCATGGTTTAGTTTATGGGACTTTGATGAACCACAAGGTTTTTCTGATTATGTTGACCAGTTTGGCAAATGTGCCATGCCAAATCAAACTTCCTTTGGAGCTGGAGGGGATTATTCCATGCAAAATCATGTTAAAACTTCTTGTTTTGTTGATACATATGATAGCCTCTTCTATGGAAAAGACATGTTTGTATGA 840 0.4119 MVAMKGSLATQKEWRKGPWIGEEDKLLCEYVSLHGEGRWSSVAKLTGLNRSGKSCRLRWVNYLRPGLKKAQLTPREEEMIIELHAILGNKWSTIAKYLPGRTDNEIKNYWRTHSGKRERSKHNKKLQRPKVKNVLKQLKQKQQHEQQPQEYDIKSSMSHEETENETKSFHTQNNNQQEILEMGFMYPTTIEHQYTVPSMHDGFSSTWQDTLADDGSWFSLWDFDEPQGFSDYVDQFGKCAMPNQTSFGAGGDYSMQNHVKTSCFVDTYDSLFYGKDMFV* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2236 279 PANTHER MYB TRANSCRIPTION FACTOR 4 233 - -
Gso18g2236 279 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 233 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso18g2236 279 Gene3D - 72 117 - -
Gso18g2236 279 Gene3D - 16 69 - -
Gso18g2236 279 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Gso18g2236 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Gso18g2236 279 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Gso18g2236 279 MobiDBLite consensus disorder prediction 143 167 - -
Gso18g2236 279 MobiDBLite consensus disorder prediction 140 172 - -
Gso18g2236 279 CDD SANT 18 63 IPR001005 -
Gso18g2236 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Gso18g2236 279 Pfam Myb-like DNA-binding domain 73 113 IPR001005 -
Gso18g2236 279 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Gso18g2236 279 CDD SANT 73 113 IPR001005 -
Gso18g2236 279 SMART sant 68 116 IPR001005 -
Gso18g2236 279 SMART sant 15 65 IPR001005 -
Gso18g2236 279 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2236 Gso-Chr18 55296513 55298223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2236 15 229 MYB Transcription Factor Family AT3G30210 49.327 4.52e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g2236 Myb_DNA-binding 5.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2236 K09422 - gmx:100816944 562.762