Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2222 ATGCTACATTTTTTTGCAGCAAGAAAAATGGGCTTCTCTCAGTTACCCAAAGCAACTCCTAGCATTTTGTTCTTGGTTCTGCTGTCTTGTACTTGCTTCACTTCAACAGATGCTTATGATCCGCTTGACCCAAATGGGAATATAACAATCAAATGGGATGTTATATCCTGGACCCCTGATGGATATGTAGCTGTTGTTACAATGAACAACTTCCTAGCATTTCGTCACATCCCTTCACCTGGCTGGTCAATGAGATGGACATGGGCCAAAAAGGAGGTAATATGGAACATGGTGGGAGGGCAGGCCACAGAACAAGGGGATTGCTCAAAATTTAAGGGAAATATTCCACATTCCTGTAAGAAAAATCCCACAGTTGTAGATTTGCTTCCTGGAACACCTTACAATCAACAAGTTGCAAATTGCTGCAAAGGTGGAGTGCTCACTACATTGGTGCAGGATCCAACCAAAGCAGCTGCATCATTTCAAGTCAGTGTTGGTAGAGCTGGAACCACAAACAGAACTGTCAAACTCCCAAAAAACTTCACCTTGAAAGCACCGGGACCAGGTTATACTTGTGGGCCAGCTAAGATTGTGAGACCCACTAAATTCATTACTCCAGACAAAAGGAGAGTGACCGTAGCACTGATGACATGGAAAGTGGTATGCACATACTCACAATTTCTGGTTCGTAAAACTCCAACTTGCTGTGTCACACTTTCATCTTTCCATAATAATACTGTTGTGCCCTGCCCAACATGTTCATGTGGCTGCCAAAGGAACTCATCTCGGTCAAGGAGATGTGTAAATCCAGGTACACCACATTTGGCCTCTAACGTTACTAGCTCTGGGACGAATAATTTGTCACCTTTGGTTCAATGTACTAAGCATATGTGCCCAACCCAAGTTCACTGGCACGTTATGCGAAACTCCAAGAAATACTGGCGTGTGAAGGTTACTGTTACTAATTTTAGTTACAGGATGAATTATTCTGACTGGAACTTGCTTGTTCAACACCATAACTTCAACAATCGGACTCAAGTGTTTGGTTTCAACTACAAGTTACTGGCTTTGGATGCATATACAAATGATATAGCAATGCTGTGGGGAATTAAGTCCCGTCATAATGACATTCTCAACCAAGCTGGCCCTAAAGGCAATGTTCAAGCAGAGCTACTCTTCAGAAAGGATAAAGCAACTTTTACTTTTGATAAGGGTTGGGCTTTTCCTCGAAGGATCTACTTCAATGGTGACATATGTGTAATGCCACCACCTGATGCTTATCCATTTTAG 1290 0.4248 MLHFFAARKMGFSQLPKATPSILFLVLLSCTCFTSTDAYDPLDPNGNITIKWDVISWTPDGYVAVVTMNNFLAFRHIPSPGWSMRWTWAKKEVIWNMVGGQATEQGDCSKFKGNIPHSCKKNPTVVDLLPGTPYNQQVANCCKGGVLTTLVQDPTKAAASFQVSVGRAGTTNRTVKLPKNFTLKAPGPGYTCGPAKIVRPTKFITPDKRRVTVALMTWKVVCTYSQFLVRKTPTCCVTLSSFHNNTVVPCPTCSCGCQRNSSRSRRCVNPGTPHLASNVTSSGTNNLSPLVQCTKHMCPTQVHWHVMRNSKKYWRVKVTVTNFSYRMNYSDWNLLVQHHNFNNRTQVFGFNYKLLALDAYTNDIAMLWGIKSRHNDILNQAGPKGNVQAELLFRKDKATFTFDKGWAFPRRIYFNGDICVMPPPDAYPF* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2222 429 Pfam COBRA-like protein 62 225 IPR006918 GO:0010215|GO:0031225
Gso18g2222 429 PIRSF COBRA 13 429 IPR006918 GO:0010215|GO:0031225
Gso18g2222 429 PANTHER COBRA-LIKE PROTEIN 16 429 - -
Gso18g2222 429 PANTHER PROTEIN COBRA 16 429 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2222 Gso-Chr18 55188434 55192528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2222 21 429 COBRA Gene Family AT3G02210 68.049 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2222 - - gmx:112997606 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0355 13 15061140 15065536 Gso18g2222 18 55188434 55192528 PCT
Gso19g0293 19 4333131 4337770 Gso18g2222 18 55188434 55192528 PCT