Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2221 ATGGCCCAGTCTTTCGGCCAGACCGAGATCAACTGGGACAAGCTTGATAAAACTAGGTTCTATGTCGTAGGAGCTGGACTCTTTACAGGTGTTTCGGTGGCACTTTACCCCGTTTCTGTTGTGAAAACTAGGCTGCAGGTTGCCACAAGGGATGCTGTAGAGAGAAATGTGTTTTCTGTTGCAAAAGGACTACTTAAAACAGATGGCATCCCTGGTTTGTATAGAGGGTTTGGCACGGTTATCACTGGTGCAATTCCTGCCAGAATCATATTCCTCTCCACTCTAGAGACCACAAAGGTGGCTGCCTTCAGAATGCTTGAACCATTTAGACTATCTGAAACTTCTCAGGCTGCCATTGCAAATGGAGTTGCAGGCATGACATCATCGCTTTTTGCTCAATCTGTGTTTGTACCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATACTCAGGCCATGCCCAATATAGCGGGGGTCTGGATGTTGTTCGCCAGGTTTTAAGGACTGATGGCATACGGGGATTGTATCGAGGGTTTGGTCTGTCTGCTATTACTTATGCCCCTGCCAGTGCAGTATGGTGGGCAAGTTATGGTTCAAGCCAACGCTTCATTTGGAGATTCCTGGACCATGGTGCCAAATATGATGAAGTCGCTCCTAGTCTGCAGAAAATTATGTTAGTTCAGGCTACTGGAGGGATTATCGCTGGTGCAACTTCATCCTGCATTACAACCCCATTGGATACTATCAAGACACGATTGCAGGTAATGGGACATGAAAATAGAAGCTCTATAAAACAAGTTGCTAAAGATTTAATCAATGAAGATGGTTGGAGAGGCTTTTATAGAGGGTTTGGTCCAAGATTTTTTAGCATGTCAGCATGGGGTACTTCAATGATATTGACTTATGAGTATCTGAAACGCGTATGCTCAAAAGATGAATAG 945 0.4455 MAQSFGQTEINWDKLDKTRFYVVGAGLFTGVSVALYPVSVVKTRLQVATRDAVERNVFSVAKGLLKTDGIPGLYRGFGTVITGAIPARIIFLSTLETTKVAAFRMLEPFRLSETSQAAIANGVAGMTSSLFAQSVFVPIDVVSQKLMVQGYSGHAQYSGGLDVVRQVLRTDGIRGLYRGFGLSAITYAPASAVWWASYGSSQRFIWRFLDHGAKYDEVAPSLQKIMLVQATGGIIAGATSSCITTPLDTIKTRLQVMGHENRSSIKQVAKDLINEDGWRGFYRGFGPRFFSMSAWGTSMILTYEYLKRVCSKDE* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2221 314 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 7 314 - -
Gso18g2221 314 Pfam Mitochondrial carrier protein 27 100 IPR018108 -
Gso18g2221 314 Pfam Mitochondrial carrier protein 228 313 IPR018108 -
Gso18g2221 314 Pfam Mitochondrial carrier protein 119 205 IPR018108 -
Gso18g2221 314 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Gso18g2221 314 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Gso18g2221 314 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Gso18g2221 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
Gso18g2221 314 SUPERFAMILY Mitochondrial carrier 13 306 IPR023395 -
Gso18g2221 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Gso18g2221 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 309 IPR018108 -
Gso18g2221 314 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 7 314 - -
Gso18g2221 314 Gene3D Mitochondrial carrier domain 21 314 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2221 Gso-Chr18 55182346 55186851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2221 10 314 Chloroplast and Mitochondria Gene Families AT5G15640 73.290 3.54e-170 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2221 K15121 - gmx:100782750 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2221 18 55182346 55186851 Gso8g2052 8 21816603 21821450 GST
Gso13g0356 13 15066574 15072457 Gso18g2221 18 55182346 55186851 PCT
Gso19g0292 19 4315222 4320745 Gso18g2221 18 55182346 55186851 PCT
Gso18g2221 18 55182346 55186851 Gso13g0356 13 15066574 15072457 PCT
Gso18g2221 18 55182346 55186851 Gso19g0292 19 4315222 4320745 PCT