Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2218 ATGTTTCGGGTAAGTGACAACAAATCAAGCAAGCACGTGCCACAAATAGGGAAAATGCTTCTCAATTGTTTGGGCTTCTGCGGTTCCATGAACATTACTCATACAAGCTCATCTCAGAGAAAGTATCCAACGGTAATAGAAGAGTTGTGCCATCAATTTTCTCTGGCCGATCTTAGGAAATCCACCAACAACTTCGATCAAAACAGAGTAATTGGACGTGGATTATTTAGTGAAGTATATAAAGGCTCTGTACAACATAAGGGTGCTTCTGATTATACTGTTGCAGTAAAGCGATTCAATGAACGAGGATTGGAAGCGTTCAAGAAGGAAATAGAATTGCTCTGCCAGCTTTTTCACCCTAATTGTGTCTCTATAATAGGATTCTGCAACCACATAAAAGAGAAGATTATTGTGTACGAGTACATGTCCAATGGTTCTCTAGCTGATTACCTACAAGGTGGAGATGCAGAAGCATTATCGTGGAAGAAAAGACTAGAGATCTGCATTGGAGTAGCTCGTGGACTACACTACCTTCACACTGGAGCCAAGCGCTCTGTCTTTCACTGTATCCTCAGTCCTAGTACCATTCTTTTGGATGATCACTTGAAGCCAAAACTTGCAGGTTTCGGCGTTAATGTGCAGGGATCACGTTTTATGACAAAGAAAAAACAAATCAAACTAGACCTTATCACGGGTACTTTTGGCTACATGGCTACGGAGTATGCCATCAATGGTACCGTGACAGATAAATGTGATGTTTTCTCATTTGGTATGGTTCTACTAGAAGTTGTGTGTGGAAGGCAATATTTAATACACCCAAGAGAAACAGAATTTCTGGAGAAGCCTGTTGAAGAGAAAATTGATGCAAATATCAAAGGGAAAATTGCACCTGAGTGTTGGCAAGTCTTTATTGATATCGCCCACAGATGTGTGAAGCATGAACCAGATGAGCGACCAATAATAGGAGAAGTAGAGGTGGAACTTGAGCATGCCCTCTTGTTGCAGGAACAAGCAGATATCACTAACACCAATGGTGAATATTCTTTATTGTCCAAAACCGTTATTGACCTAAAACTGGTGCGGGAATATTTTGAGCAGGCTCTATTTCACCAAGAAGATATCACATAA 1128 0.4069 MFRVSDNKSSKHVPQIGKMLLNCLGFCGSMNITHTSSSQRKYPTVIEELCHQFSLADLRKSTNNFDQNRVIGRGLFSEVYKGSVQHKGASDYTVAVKRFNERGLEAFKKEIELLCQLFHPNCVSIIGFCNHIKEKIIVYEYMSNGSLADYLQGGDAEALSWKKRLEICIGVARGLHYLHTGAKRSVFHCILSPSTILLDDHLKPKLAGFGVNVQGSRFMTKKKQIKLDLITGTFGYMATEYAINGTVTDKCDVFSFGMVLLEVVCGRQYLIHPRETEFLEKPVEEKIDANIKGKIAPECWQVFIDIAHRCVKHEPDERPIIGEVEVELEHALLLQEQADITNTNGEYSLLSKTVIDLKLVREYFEQALFHQEDIT* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2218 375 PANTHER TYROSINE KINASE FAMILY PROTEIN 35 351 - -
Gso18g2218 375 Pfam Protein tyrosine and serine/threonine kinase 67 325 IPR001245 GO:0004672|GO:0006468
Gso18g2218 375 ProSiteProfiles Protein kinase domain profile. 65 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2218 375 Gene3D Phosphorylase Kinase; domain 1 25 141 - -
Gso18g2218 375 Gene3D Transferase(Phosphotransferase) domain 1 142 352 - -
Gso18g2218 375 PANTHER OS07G0166700 PROTEIN 35 351 IPR045272 GO:0004714|GO:0006468
Gso18g2218 375 SUPERFAMILY Protein kinase-like (PK-like) 41 326 IPR011009 -
Gso18g2218 375 ProSitePatterns Protein kinases ATP-binding region signature. 71 97 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2218 Gso-Chr18 55170790 55172310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2218 17 339 Receptor kinase-like Gene Family AT3G51550 37.389 2.07e-66 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gso18g2218 PK_Tyr_Ser-Thr 5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2218 - - gmx:100781132 689.108