Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2213 ATGGACACAGCTTGCATACGATTTGCTTTAGGAGCCATCCTCCTCCACCTGCTGTTGTTGTCCCTCCCTAACCTTTCCATAGCAGAGTTTATTTATAGTCCCCATGAGATCTTCAGCATCAACTGTGGCTCTAACAGTAGCTTGTCCACGCGCGATGGTCGCAATTGGACTGCAGACATCAAATTCCTCTCAGAAAACAAGGACTCAGTTGCTGCTCCTGCACTCACACCATCTACCCTGGAAGGTCCTTACACCGATGCTCGTTTCTCTCACTCCCAATTCACTTACTCTTTCCCTGTCTCCACCGGCCCTAAGTTTCTTCGCCTCTTCTTCTACTCAACTTCCTACCAAAACTTCCATCGCTCCAAAGCCTATTTCTCAGTCAAAGCAGGCCCATACATCCTCCTTCAGGATTTCAACGCTTCCCTCCATGCTGATGCTGGTAACGAGCCTGGCGACTACTTGTTCAGGGAGTATTGCATCAACCTCAAAGATGGCGACCGGCTCAACATAACCTTCATTCCAAGCAAAACATCTCAGAATCCAGATTCGTACGCTTTCATCAATGGAATAGAGATTGTTTCAATGCCCCCTTTTCTCTACTACACCAATCCTGAGGACGACAACACTGGATGGCCTCAACCAGTTGGCCTCAATACGAACCCGTTCCCCATTGAAAACAACTTTGCTCTGGAGACAAATTATCGGTTAAGAGTTGGAGACCAACAAATCCCGGCCTCACAGGACACGGGTATGCTCAGGATCTGGGATGTGGATAACAAATATGTAACGACTCAAAGTGTACTATCTCTAGATATTGGCATTGGAATTAAGCTGAGATTCACAAAGATTCCTAACTACACGGCACCAGACACAGTGTACCGATCCGTAAGGAATATGGGAAGTAATGGCACCATCAACATGGGGTTCAACCTCACATGGCAACTTCCCGTTGATTCAGGCTTCACCTACTTGCTAAGGTTACACTTTTGCCAGCTTGACCCGGATATGAAAAATCCTGGTTACCAGAGCTTCTTCATATTCGTTCAGGATCAGTTGGTTGAAATGTGGGCAGACATTCTCGGTTGGAGCGATAAACAGGAGGGTGTCCCAGTGGTTAAACAGTATGTAGTTTTCATCCCAGGGAATCAGCAGGAAACGCTTAATCTTTCACTGAAAATGCATCCTAACCCTCAAAGCTTGGCCAAGGACGCTCAAATAAACGCAATTGAACTCTTCAAAATCAACGACCCAACAGGTAACCTCGCTGGACCTAACCCAGACTCTCATCCAAAGACCTCCGAGGTTCCTCTTCTGAGCTCAAACAAGAAAAGCAAAGGCAGCACGAGAACCCTAACAGCCGCCGTCGCAGGCGCAGTTTCCGGTGTCGTTATGTTATCCCTTACTGTTGCTTTCTTCCTCATCAAACGCAAGAAGAACATGGCCGTCAACGAAGGTTCCAATAAAAAAGGTGGAACTTCTCGAGGCGGTGGCTCATCGTCGCTACCAACCAACCTCTGCCGTAAGTTCTCAATCGCGGAAATCAGAGCCGCCACCAACAACTTCGACGAACTCTTCGAGGTTGGATTGGGAGGCTTCGGCAACGTGTACAAAGGATACATCGACGACGGTTCAACATGTGTCGCAATCAAAAGGCTCAAACCCGGTTCTCAACAAGGTCTGAACGAGTTCTTGAACGAGATCGAAATGCTGTCTCAACTTCGCCATCTCCATCTTGTTTCCCTCATCGGTTATTGCTACGAGAACAACGAGATGATACTGGTTTACGATTTCATGGATCAAGGAACCCTCCGGGAGCATCTCTACGGCACTGATAACCCTTCCCTTTCATGGAAACAAAGGCTTCAGATATGCATAGGTGCAGCACGAGGACTGCAGTATCTGCATACGGGTGCGAAGCACATGATCATTCACCGTGACGTGAAGAGCACCAACATCTTATTGGATGAGAAATGGGTGGCCAAGGTTTCAGACTTCGGGTTATCCCGAATTGGGCCCATTGGTTCTTCAATGACCCATGTGAGCACTCAGGTGAAAGGTAGCGTTGGATATTTAGACCCGGAGTATTACAAACGACAGCGTTTGACTGAGAAGTCTGACGTGTACTCCTTTGGGGTGGTGCTCTTGGAGGTATTGTCTGGGAGGCAGCCTTTGCTCCGCATGGTGGAGAAGCAACAGGTGTCACTGGTTGATTGGGCGAAGCATCTATATCAGAAGGGTTCTCTGGGTGCCATTGTGGATGCAAAACTAAAGGGCCAGATAGCAACTCAGTGTTTGAACAGATTTGGCGAGGTTGCGCTAAGCTGTTTGCATGAGGATGGGACCCAGCGTCCTTCCATGAATGACGTCGTTGGGGTGTTGGAGTTTGTTCTGCAGCTTCAGGATAGTGCTGTTAATGGAGTGGTGCCTTTGGTGGTGAGTGGTGGGGATTATGAAGATAGTGAAGACATGTTTAGCAGTACCCACAGTAGTATACAACCTTCGGATTATAGTAACAGCACTGGGTTGAACACCACAAGCTATGGGAGTAAGGAATCCGACAGGTTAATCGTCCCGGAGAATGTTTTCTCTGAGATTAATGATCCCAAGGGACGATGA 2619 0.4788 MDTACIRFALGAILLHLLLLSLPNLSIAEFIYSPHEIFSINCGSNSSLSTRDGRNWTADIKFLSENKDSVAAPALTPSTLEGPYTDARFSHSQFTYSFPVSTGPKFLRLFFYSTSYQNFHRSKAYFSVKAGPYILLQDFNASLHADAGNEPGDYLFREYCINLKDGDRLNITFIPSKTSQNPDSYAFINGIEIVSMPPFLYYTNPEDDNTGWPQPVGLNTNPFPIENNFALETNYRLRVGDQQIPASQDTGMLRIWDVDNKYVTTQSVLSLDIGIGIKLRFTKIPNYTAPDTVYRSVRNMGSNGTINMGFNLTWQLPVDSGFTYLLRLHFCQLDPDMKNPGYQSFFIFVQDQLVEMWADILGWSDKQEGVPVVKQYVVFIPGNQQETLNLSLKMHPNPQSLAKDAQINAIELFKINDPTGNLAGPNPDSHPKTSEVPLLSSNKKSKGSTRTLTAAVAGAVSGVVMLSLTVAFFLIKRKKNMAVNEGSNKKGGTSRGGGSSSLPTNLCRKFSIAEIRAATNNFDELFEVGLGGFGNVYKGYIDDGSTCVAIKRLKPGSQQGLNEFLNEIEMLSQLRHLHLVSLIGYCYENNEMILVYDFMDQGTLREHLYGTDNPSLSWKQRLQICIGAARGLQYLHTGAKHMIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPIGSSMTHVSTQVKGSVGYLDPEYYKRQRLTEKSDVYSFGVVLLEVLSGRQPLLRMVEKQQVSLVDWAKHLYQKGSLGAIVDAKLKGQIATQCLNRFGEVALSCLHEDGTQRPSMNDVVGVLEFVLQLQDSAVNGVVPLVVSGGDYEDSEDMFSSTHSSIQPSDYSNSTGLNTTSYGSKESDRLIVPENVFSEINDPKGR* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2213 872 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 30 844 - -
Gso18g2213 872 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Gso18g2213 872 Gene3D - 229 416 - -
Gso18g2213 872 Gene3D - 35 196 - -
Gso18g2213 872 MobiDBLite consensus disorder prediction 822 855 - -
Gso18g2213 872 SUPERFAMILY Protein kinase-like (PK-like) 499 797 IPR011009 -
Gso18g2213 872 MobiDBLite consensus disorder prediction 825 852 - -
Gso18g2213 872 Pfam Protein tyrosine and serine/threonine kinase 527 792 IPR001245 GO:0004672|GO:0006468
Gso18g2213 872 Pfam Malectin-like domain 40 415 IPR024788 -
Gso18g2213 872 ProSitePatterns Protein kinases ATP-binding region signature. 528 551 IPR017441 GO:0005524
Gso18g2213 872 MobiDBLite consensus disorder prediction 420 445 - -
Gso18g2213 872 ProSiteProfiles Protein kinase domain profile. 522 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2213 872 PANTHER OS07G0166700 PROTEIN 30 844 IPR045272 GO:0004714|GO:0006468
Gso18g2213 872 MobiDBLite consensus disorder prediction 422 445 - -
Gso18g2213 872 CDD STKc_IRAK 528 795 - -
Gso18g2213 872 SMART serkin_6 522 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2213 872 Gene3D Phosphorylase Kinase; domain 1 507 598 - -
Gso18g2213 872 Gene3D Transferase(Phosphotransferase) domain 1 599 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2213 Gso-Chr18 55098463 55101564 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2213 32 872 Receptor kinase-like Gene Family AT3G51550 46.900 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gso18g2213 Malectin_like 2.5e-36 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2213 - - gmx:100776868 1409.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2213 18 55098463 55101564 Gso13g0361 13 15142679 15145527 PCT