Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2200 ATGTTTATCAAATATCTGAGCTTCTGCTGTTCGAAGCATACAAGTTCATCTCAGCGACAGTATCCAACTGTGATAGAAGAGCTATGTCATCAATTTCTGTTGGCTGATCTTAGGAAATCAACCAACAACTTCGATGAAAACCAAATAGTTGGAAGTGGAGTCCTTAGTATTGTGTATAAAGGTTCTCTCCAACTCAATGGTGTTACTGAGTGTACAGTTGCAATGAAGCGAATATGTGGGAACACCGAGGAAACACTTAAGCAGTTCAAGAACGAAATTGAGTTGCTCTGCCAGCTTCGTCATCCAAACTTGATGACTCTATTAGGATTTTGTGACCACAAAGACGAGAAGATTGTGGTATATGAGTACATGCCCAATGGATCTCTCCATGATCGCCTATACTGTAGTGATGTGAAAAAGGAACCACTAACATGGAAGCATAGGCTAAAGATATGCATAGGAGCAGCACATGGACTACACTACCTTCACACAGGTGCCAAGCGAACCATCTTTCATCGTGACATAACACCTTATAAAATTCTTTTGGATAGAAACATGGTGGCCAAACTCTCAGACTTCCGGCTTTCCTTAAAAGGACCGCATTATGCATCAAAGCCAAAACCCAAGACGATATCAAAAGACGGCTTTATAGGTACATGTGGTTATGTAGCTCCTGAGATTTCAGAAAACAAGACATTAACAGAAAAATGCGATGTTTACTCCTTTGGTGTAGTGCTACTAGAAGTAGTATGCAAAGACAAGCTTAAAAATGTTGACAAGAGGCAGAAGCACCCTGTTGAGGAGAATATTGATCCGAATATCAAAGGCAAGATTGCACCAGAGTGTTGGGAAGTATTTATTGATATCACAGAAAGATGCTTGAAGTTTGATCCAGATGAGCGGCCGGCAATGGGTAAAGTGGAGGTGCAACTTGAGCTTGCTCTGTCATTGCAGGAAGAAGCAGAGTGCAGCCAATCCTGCAACATCTTAGGCCTTCATTAG 1002 0.4152 MFIKYLSFCCSKHTSSSQRQYPTVIEELCHQFLLADLRKSTNNFDENQIVGSGVLSIVYKGSLQLNGVTECTVAMKRICGNTEETLKQFKNEIELLCQLRHPNLMTLLGFCDHKDEKIVVYEYMPNGSLHDRLYCSDVKKEPLTWKHRLKICIGAAHGLHYLHTGAKRTIFHRDITPYKILLDRNMVAKLSDFRLSLKGPHYASKPKPKTISKDGFIGTCGYVAPEISENKTLTEKCDVYSFGVVLLEVVCKDKLKNVDKRQKHPVEENIDPNIKGKIAPECWEVFIDITERCLKFDPDERPAMGKVEVQLELALSLQEEAECSQSCNILGLH* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2200 333 ProSiteProfiles Protein kinase domain profile. 44 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2200 333 SUPERFAMILY Protein kinase-like (PK-like) 19 315 IPR011009 -
Gso18g2200 333 Pfam Protein tyrosine and serine/threonine kinase 47 310 IPR001245 GO:0004672|GO:0006468
Gso18g2200 333 PANTHER OS07G0166700 PROTEIN 14 328 IPR045272 GO:0004714|GO:0006468
Gso18g2200 333 PANTHER TYROSINE KINASE FAMILY PROTEIN 14 328 - -
Gso18g2200 333 Gene3D Phosphorylase Kinase; domain 1 5 123 - -
Gso18g2200 333 Gene3D Transferase(Phosphotransferase) domain 1 124 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2200 Gso-Chr18 54986879 54989510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2200 15 322 Receptor kinase-like Gene Family AT5G38990 43.034 1.10e-74 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gso18g2200 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2200 - - gmx:100775244 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2200 18 54986879 54989510 Gso8g2042 8 21560395 21563411 GST