Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2194 ATGGTACTGTGGAACAGAATTTTGACAATCACAAAGTGGAAGGACAAAACTCAGCACCCAGCAACCAACAATGAGAGACATAAGATCATGATTAAGAGCCCCAAAGAAGCAGATTTTCCATTAAAACAGGAGGGTCATTCTCAATCAATTACTGATCCTGAAAAGGCAAAGGCTTCATCGAGCTCAGTAGCACAATGGCCAAGATTGAAAGATCCAAGGATTGTGCGAGTATCTAGAGCCTTTGGAGGAAAAGACAGGCACAGCAAGGTTTTCACAATAAGAGGGTTAAGAGACAGACGGGTGAGGCTATCAGTACCAACTGCCATCCAACTCTATGATCTTCAAGATAGGCTAGGGCTCAGTCAACCTAGCAAGGTTGTTGATTGGTTGCTCGATGCAGCTAAGCATGAAATTGATGAACTTCCACCACTTCCTGTTGTTCCTTCAGTGAATAACTTCACCCTTGGTCATCCATCTGCTGTTACCTCTAATGAAGCTACCACCTCAAATTCTCAGCCTAATGAGCAACTTCTTAATATCAACAGAAGCATTCAGTGGGAAGGTTCAAACCAGAATTCTACATGGAAATTAAAGCCTAAAGAAGTTTCACGAGAAATGATTAGCACTGATAAACCAAATTGGATAAGTAGAAGTGAAGAGGATAAGCAAGGAAGCAATAATGAAGGTCCTAGCACACGTGTTATACCAAATATTAATCTCTTACCAAGAGCAAATCTTAATCATCCTTCATTCTTGGGCTTGCTGAATACTATGCCACATGGTTACCAATGGGAACCTTCTGCTGGTGATGTTTCTCATCAGTTGGGAAACAATGGATTTGCAAACCAAACAGATATGCACAGCATTAACGTTGTACCTTTCCCAACATCAACATTGTCATTATCAACTGGGAATTCTCAAATTCTGCTATGTCCTCCAGGAACAGCACAACCATATTTCCCTTCACATGTTACAATGGACATGGATCCGAGACAAATCAACCACTATCAGATGTTGAGTTCAGGTTCTCAAAATCCATTGGCGAATTATCTCAATCATTCTTTCAGCTTGGCTATGATGACTCATAAACCTCTTCATTCACCCAACAACAGCAAAAGCCCCTCCCACAAAGACCAAGATTTCCCTTCCAACTGA 1155 0.413 MVLWNRILTITKWKDKTQHPATNNERHKIMIKSPKEADFPLKQEGHSQSITDPEKAKASSSSVAQWPRLKDPRIVRVSRAFGGKDRHSKVFTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAKHEIDELPPLPVVPSVNNFTLGHPSAVTSNEATTSNSQPNEQLLNINRSIQWEGSNQNSTWKLKPKEVSREMISTDKPNWISRSEEDKQGSNNEGPSTRVIPNINLLPRANLNHPSFLGLLNTMPHGYQWEPSAGDVSHQLGNNGFANQTDMHSINVVPFPTSTLSLSTGNSQILLCPPGTAQPYFPSHVTMDMDPRQINHYQMLSSGSQNPLANYLNHSFSLAMMTHKPLHSPNNSKSPSHKDQDFPSN* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2194 384 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 30 380 - -
Gso18g2194 384 Pfam TCP family transcription factor 83 208 IPR017887 -
Gso18g2194 384 ProSiteProfiles TCP domain profile. 83 141 IPR017887 -
Gso18g2194 384 MobiDBLite consensus disorder prediction 363 384 - -
Gso18g2194 384 MobiDBLite consensus disorder prediction 199 232 - -
Gso18g2194 384 MobiDBLite consensus disorder prediction 362 384 - -
Gso18g2194 384 MobiDBLite consensus disorder prediction 41 63 - -
Gso18g2194 384 MobiDBLite consensus disorder prediction 44 63 - -
Gso18g2194 384 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 380 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2194 Gso-Chr18 54928370 54930687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2194 66 338 TCP Transcription Factor Family AT3G02150 40.138 9.33e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso18g2194 TCP 5.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2194 - - gmx:100816424 771.541