Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2177 ATGGCTCAAAGACAGATCTTTGCTCATGTGGTGATTTTGTTGCTTATGGTCTTAGTTGGAGCCAGGTTTGCTAAAGCAGAAGGAGGAGGAGAAGCTGCTGATAGGATTTTGGAACTCCCTGGTCAGCCAAAAGTGTCATTTCAGCAGTTTTCTGGCTATGTTACTGTTAACAAGGTTGCTGGTAGAGCTCTCTTTTACTGGCTCACTGAAGCTGCCCAAAATTCTCTCACCAAACCTTTGGTCATTTGGCTCAATGGAGCTCAAGATTCTCTGGAATTTGTTATACAATGGCTAGAACGATTCCCTCGTTACAAAAACCGGGAACTTTATATCACTGGAGAGAGCTATGCAGGCCATTATGTTCCTCAATTAGCCAAGGAAATCTTGACCTACAACGCAAAAACCAAGCACCCCATCAATCTCAAAGGAATCATGGTAGGAAATGCAGTGACAGACAACTACTATGATAACTTGGGCACAGTGACGTATTGGTGGAGCCATGCTATGATCTCCGACCAGACTTACCGGCAACTAATGAGTACATGTGATTTTCACAGGCAGAAGGAATCTGATGAGTGTGAGTCTGTGTATAGCTATGCCATGGATCAAGAGTTTGGTAATATTGATCAGTACAACATCTATGCTCCTCCATGCAACAACTCTGATGGTAGTAGTAGCTCTGCCACCCGCCGCACCATGCGTTTACCTCACCGACCCCATGTGGATTTTAGGCATTGGTCTGGTTATGATCCATGTACGGAAAAGTATGCAGAGATTTACTACAACAGGCCTGATGTTCAGAAAGCACTTCATGCCAACAAAACCGGTATTCCTTATAGGTGGACTGCTTGCAGCGAGGTTTTGAATCGGAACTGGAATGATACTGATGTATCTGTTCTTCCAATTTATAGAGAATTGATAGCTCACGGAATAAGAGTTTGGGTGTTCAGTGGGGACGTGGACTCAGTGGTGCCTGTCACAGCAACAAGATATGCCCTTGCCCAGCTTAAGTTGTCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAGGTTGGAGGGTGGACAGAGGTGTACGAAGGGGTAACATTCGCGACAGTGAGAGGAGCAGGGCATGAAGTGCCACTATTCAAGCCAAGAGCAGCACTTCAGTTATTCAAATCATTCCTTGAAGGAAAGCCTCTTCCAAAGTCCTAG 1200 0.4475 MAQRQIFAHVVILLLMVLVGARFAKAEGGGEAADRILELPGQPKVSFQQFSGYVTVNKVAGRALFYWLTEAAQNSLTKPLVIWLNGAQDSLEFVIQWLERFPRYKNRELYITGESYAGHYVPQLAKEILTYNAKTKHPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLMSTCDFHRQKESDECESVYSYAMDQEFGNIDQYNIYAPPCNNSDGSSSSATRRTMRLPHRPHVDFRHWSGYDPCTEKYAEIYYNRPDVQKALHANKTGIPYRWTACSEVLNRNWNDTDVSVLPIYRELIAHGIRVWVFSGDVDSVVPVTATRYALAQLKLSTKIPWYPWYVKNQVGGWTEVYEGVTFATVRGAGHEVPLFKPRAALQLFKSFLEGKPLPKS* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2177 399 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 9 87 IPR001563 GO:0004185|GO:0006508
Gso18g2177 399 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 86 398 IPR001563 GO:0004185|GO:0006508
Gso18g2177 399 Gene3D - 299 393 - -
Gso18g2177 399 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 25 9 87 - -
Gso18g2177 399 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 25 86 398 - -
Gso18g2177 399 ProSitePatterns Serine carboxypeptidases, serine active site. 111 118 IPR018202 GO:0004185
Gso18g2177 399 ProSitePatterns Serine carboxypeptidases, histidine active site. 363 380 IPR033124 GO:0004185
Gso18g2177 399 Gene3D alpha/beta hydrolase 88 220 IPR029058 -
Gso18g2177 399 Gene3D alpha/beta hydrolase 30 87 IPR029058 -
Gso18g2177 399 SUPERFAMILY alpha/beta-Hydrolases 38 397 IPR029058 -
Gso18g2177 399 PRINTS Carboxypeptidase C serine protease (S10) family signature 97 122 IPR001563 GO:0004185|GO:0006508
Gso18g2177 399 PRINTS Carboxypeptidase C serine protease (S10) family signature 363 376 IPR001563 GO:0004185|GO:0006508
Gso18g2177 399 Pfam Serine carboxypeptidase 87 393 IPR001563 GO:0004185|GO:0006508
Gso18g2177 399 Pfam Serine carboxypeptidase 41 86 IPR001563 GO:0004185|GO:0006508
Gso18g2177 399 Gene3D - 252 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2177 Gso-Chr18 54775412 54782493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2177 257 396 Calmodulin-binding Proteins AT2G22960 31.206 2.33e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2177 K16297 - gmx:100807680 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2177 18 54775412 54782493 Gso8g2025 8 21231609 21238590 GST