Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2175 ATGGCGTTCTTAAATAAAATTGGGAATCTGCTCAAGAATTCTGCTGTCAAGCACATCAATCAGGATTTTTCGGCGTCTACCCCTTCACTTTTCCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTTCGTCGGAGGTATTTCTTACAGCACTGATGATATGAGTTTGCGAGAGTCTTTTGCTCGCTATGGAGAAGTAATTGATGTCAAGGTTATTATGGATCGTGAAACTGGCAGGTCAAGAGGTTTTGGCTTTGTAACTTTTGCAACAAGTGAGGATGCATCTTCTGCCATTCAGGGCATGGATGGCCAGGATCTTCATGGTCGGAGGATACGGGTGAATTATGCTACAGAAAGGTCACGTCCAGGGTTTGGTGGTGATGGTGGATATGGCAGTGGTGGTGGTGGTGGCTACAATGGGGGTGGAAACTATGGAAGTGGAGGTGGATATGGCGGTGGTAGTGGCTATAATAGGGGTGGAAACTATGGAAGTGGCGGTTATAATGTTACTAGCAGCTATAGTGGTGGCAATGCTGAAACTAGTTACACTGGTGGTGGTAATGCTAGTAATTACCAATTCAATGAAAACTCTGGTGGAGATTTTGGCTCAGCTAGCGGTGAATTCAGCAGCAACCAAAATGACACAGCAGGTGCAGACAATGATGAATTCATTGAGCCACTTGAAGACAATGTGAGGGAGAACAATGATGGACCTACCGACTACGCTCAGAACCGCTGA 738 0.4539 MAFLNKIGNLLKNSAVKHINQDFSASTPSLFQAIRSMSSAKLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFVTFATSEDASSAIQGMDGQDLHGRRIRVNYATERSRPGFGGDGGYGSGGGGGYNGGGNYGSGGGYGGGSGYNRGGNYGSGGYNVTSSYSGGNAETSYTGGGNASNYQFNENSGGDFGSASGEFSSNQNDTAGADNDEFIEPLEDNVRENNDGPTDYAQNR* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2175 245 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 245 - -
Gso18g2175 245 SMART rrm1_1 41 114 IPR000504 GO:0003723
Gso18g2175 245 Gene3D - 12 139 IPR012677 -
Gso18g2175 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Gso18g2175 245 MobiDBLite consensus disorder prediction 189 218 - -
Gso18g2175 245 MobiDBLite consensus disorder prediction 189 245 - -
Gso18g2175 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Gso18g2175 245 SUPERFAMILY RNA-binding domain, RBD 25 148 IPR035979 GO:0003676
Gso18g2175 245 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2175 Gso-Chr18 54758623 54761692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2175 42 119 Eukaryotic Initiation Factors Gene Family AT1G49760 38.462 2.34e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2175 K12741 - gmx:100807155 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2175 18 54758623 54761692 Gso8g2023 8 21216662 21219763 GST