Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2164 ATGGTCATGGCTAGGTCTCACTGTTTGTTTCCTTTGGCCTTTTTAATGGTTATCTTTGTACCAGCCTTGGCACATGGTCGAAGAAGGGGATGGCATCTAGCCCATGCAACTTTCTATGGTGACATGCAAGGTGGAGACACCATGCAGGGTGCTTGTGGTTATGGTGATCTCTACCAGCAAGGATATGGGCTTGAAACCACAGCCCTAAGCACAGCTCTATTCAACAATGGCCAGACATGTGGTGCATGTTTTGAGATTATCTGTGTGAACTCCCAATGGTGCATTCCCAACGCAGGCCCAATCAAAGTGACCGCAACAAATTTCTGCCCCCCCAATTACAACCCCCCTAATTTCGACCATTGGTGCAACCCTCCACAAGAGCACTTCGACTTGTCCATGAAAATGTTCACCAAAATTGCCATATACAAAGCAGGGATCATCCCAGTCATGTATCGCCGTGTCCCATGCAATAAAAGTGGGGGTGTCAAGTTTGAGATGAAAGGGAACCCTTATTGGCTGTTGGTTTTGTTGTACAATGTTGGCAATGCTGGTGATGTTACTCAAGTCAGCATCAAAGGGTCTTCAAACACTGGCTGGCAATCTATGTCACGTGTTTGGGGACAAAATTGGGTTACTGGGTCTAATTTGGTAGGACAAGCCTTGTCGTTTCAAGTCACTACCAGTGATGGCAAAATGTTGAAGTTTGATAATGTTGCCCCTTCCAATTGGCAATTTGGACAGAGCTACGAGACCTACCAAAATTTTTAG 768 0.4583 MVMARSHCLFPLAFLMVIFVPALAHGRRRGWHLAHATFYGDMQGGDTMQGACGYGDLYQQGYGLETTALSTALFNNGQTCGACFEIICVNSQWCIPNAGPIKVTATNFCPPNYNPPNFDHWCNPPQEHFDLSMKMFTKIAIYKAGIIPVMYRRVPCNKSGGVKFEMKGNPYWLLVLLYNVGNAGDVTQVSIKGSSNTGWQSMSRVWGQNWVTGSNLVGQALSFQVTTSDGKMLKFDNVAPSNWQFGQSYETYQNF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2164 255 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Gso18g2164 255 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Gso18g2164 255 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Gso18g2164 255 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Gso18g2164 255 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Gso18g2164 255 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Gso18g2164 255 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Gso18g2164 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Gso18g2164 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Gso18g2164 255 SMART dpbb_1 66 151 IPR007112 -
Gso18g2164 255 Gene3D - 158 255 IPR036749 -
Gso18g2164 255 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
Gso18g2164 255 Pfam Expansin C-terminal domain 162 240 IPR007117 -
Gso18g2164 255 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Gso18g2164 255 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Gso18g2164 255 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Gso18g2164 255 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Gso18g2164 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Gso18g2164 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Gso18g2164 255 Gene3D - 20 157 IPR036908 -
Gso18g2164 255 SUPERFAMILY Barwin-like endoglucanases 30 179 IPR036908 -
Gso18g2164 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 161 IPR007112 -
Gso18g2164 255 PANTHER EXPANSIN 17 251 - -
Gso18g2164 255 Pfam Lytic transglycolase 66 151 IPR009009 -
Gso18g2164 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 251 IPR007117 -
Gso18g2164 255 PANTHER EXPANSIN-A15 17 251 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2164 Gso-Chr18 54688410 54690209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2164 25 255 Expansin Gene Family AT5G39280 61.638 4.09e-105 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2164 - - gmx:100799337 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2164 18 54688410 54690209 Gso8g2007 8 20869841 20871634 GST