Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2160 ATGGAATACAGCAATTGGGCTGAATCTCTTCAAACCGAAACCCCTCTCCCTTCTTTCCCACAACCCTCATCATCATATCCTCCTACCTATTACCCCTCTTACCCTCAAAACCCTAACCCTAACCCTTCTTCTTCTCTTCCCCTTAACCCTCCCGGGGTTGATCCCCAAACCCCATTGAACCCTATTAGCTATGCGGCTCATGAACCCGTTCCTGGTTTGGTCTACGCTCAGAGCCATGTTGGGGATGATTCATCTTCTGGGTATTGCTTGGACCATAATTGGGTTGCCAGAGAGGCTGTTAGGCAATTTGGTACTGACCCTACTCTTTATGCACCTGGCATCTCTTTGCCACCCAATGGCTCAGAACAGTTGGCTATGGCAAATCCTAGCTCTTTGTGGTGGACAAATACCACAACTCAACCTCATGTCAATGGAACACCTAAGAAAAACCAAAAGAAAACTAAGGTTGTGCAACCTGCATTTTGCGAAGTTTGCAAGATAGAATGCACCGGCAAGGAAGTGCTGGACCAGCATAAATTAGGAAAGAAGCACAAGAAGAACGTGGAGAAACTAAGGGAATCATTGACACCTACCCAAGTTCAACCATCTGGGTCATCTAAGCCTCTAATAGGACCCCAATTACCGGATGATAAGGGCAAATCCATCAGTGGGAATAAGAGTAAGAGAAAAAAAGTTGAAACTGCAGAGGATTTGGAGAAAAAGAAAATGAAAGTTCTTATGGGTGGGGCAGCAGCTTCAGCAGTTAAGATATGTGCTATATGTAACGTGGTGTGTAATAGTGAGACGGTTTATAACTATCATCTTGCAGGACAAAAGCATGCTGCTATGCAGAAGAAAGCATCGAGTCATACACAATCCAATGCCGGTTGA 891 0.4501 MEYSNWAESLQTETPLPSFPQPSSSYPPTYYPSYPQNPNPNPSSSLPLNPPGVDPQTPLNPISYAAHEPVPGLVYAQSHVGDDSSSGYCLDHNWVAREAVRQFGTDPTLYAPGISLPPNGSEQLAMANPSSLWWTNTTTQPHVNGTPKKNQKKTKVVQPAFCEVCKIECTGKEVLDQHKLGKKHKKNVEKLRESLTPTQVQPSGSSKPLIGPQLPDDKGKSISGNKSKRKKVETAEDLEKKKMKVLMGGAAASAVKICAICNVVCNSETVYNYHLAGQKHAAMQKKASSHTQSNAG* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2160 296 MobiDBLite consensus disorder prediction 180 235 - -
Gso18g2160 296 SUPERFAMILY beta-beta-alpha zinc fingers 140 192 IPR036236 -
Gso18g2160 296 SMART ZnF_U1_5 253 287 IPR003604 GO:0003676|GO:0008270
Gso18g2160 296 SMART ZnF_U1_5 157 191 IPR003604 GO:0003676|GO:0008270
Gso18g2160 296 Pfam Zinc-finger of C2H2 type 257 280 - -
Gso18g2160 296 Pfam Zinc-finger of C2H2 type 161 184 - -
Gso18g2160 296 PANTHER - 11 294 - -
Gso18g2160 296 MobiDBLite consensus disorder prediction 193 208 - -
Gso18g2160 296 MobiDBLite consensus disorder prediction 1 19 - -
Gso18g2160 296 MobiDBLite consensus disorder prediction 20 57 - -
Gso18g2160 296 MobiDBLite consensus disorder prediction 1 64 - -
Gso18g2160 296 SUPERFAMILY beta-beta-alpha zinc fingers 255 286 IPR036236 -
Gso18g2160 296 MobiDBLite consensus disorder prediction 221 235 - -
Gso18g2160 296 Gene3D Classic Zinc Finger 225 288 - -
Gso18g2160 296 Gene3D Classic Zinc Finger 142 196 - -
Gso18g2160 296 PANTHER ZINC FINGER RNA-BINDING PROTEIN 11 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2160 Gso-Chr18 54661909 54664956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2160 156 283 C2H2 Transcription Factor Family AT5G61190 34.375 4.45e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2160 - - gmx:100803425 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2160 18 54661909 54664956 Gso8g2004 8 20826651 20829121 GST