Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2146 ATGTACACTCCCAACGCCGATTCCGGCACGGCGCCGCATCCGCGCCCCACCATCACGCTCCCTCCGCGTCCCTCCGCCGAGGCCTTCTTCTCTGCCGCCGGCGGCGCCAGCCCCGGCCCCATGACCCTCGTCTCCAGCTTCTTCGGCTCCGATGCCGCTGCCGACTGCCGCTCCTTCTCGCAGCTCCTCGCCGGCGCTATGGCCTCCCCAATGGCCTTCTCCGCCGCCGCAGCATCCGCCGCCGACAACTCCGGCAAGGACGACGATGGGCCCCACAAGGGGTTCAAGCAGAGCAGACCCATGAATTTGGTCATTGCTCGTTCCCCTGTCTTCACTGTCCCACCTGGGTTGAGCCCTTCTGGGTTTCTTAACTCCCCTGGCTTCTTTTCCCCTCAGAGCCCCTTTGGGATGTCCCACCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCTCAATCTCATATGCATATGCAAGCTGATTACCAGATGCCTTCAGTAACAGCTCCCACTGAACCACCTGTACAGCAGCTGTCTTTTGCTCTAAATGAAGCTTCAGAGCAGCAAGTGGTATCATGTGTATCAGAACCTAGAAATGCTCAACTTGAAGCACCGGAACTCTCACAGGCTGATAAGAAATATCAACCATCTTCCCAGGCCATTGACAAACCTGCAGATGATGGCTACAACTGGCGTAAGTATGGGCAGAAGCAGGTTAAGGGTAGTGAGTATCCACGAAGCTATTACAAGTGCACACATCTGAATTGCGTCGTGAAGAAAAAAGTTGAGCGTGCTCCTGATGGTCACATAACTGAAATTATCTATAAAGGCCAGCATAATCATGAAAAGCCTCAGGCAAATAGGCGTGCCAAAGATAATAGTGATTCAAATGGAAATGTAACTGTTCAGCCCAAATCTGAGTCAAACTCACAAGGTTGGGTTGGACAATTAAACAAGTTAAGTGAAAACATTCCTAATTCTTCAGTTCCTGAAAGTGACCAGACCTCCAATCAAGGGGCTCCTAGGCAACTTCTACCTGGGTCAAATGAGAGTGAGGAAGTGGGTATTGTAGATAATAGGGAAGAGGCAGATGATGGCGAGCCAAACCCTAAGAGAAGGAATACTGATGTTGGAGTTTCTGAAGTACCTCTGTCTCAGAAGACTGTCACAGAATCCAAAATCATTGTGCAAACAAGAAGTGAAGTTGATCTTTTGGATGATGGCTACAGGTGGCGAAAGTATGGCCAGAAAGTGGTGAAGGGAAACCCTCATCCAAGGAGTTATTACAAATGCACTAGTGCTGGATGCAACGTGCGTAAGCATGTTGAGAGAGCTTCGACGGACCCCAAAGCTGTCATAACCACGTATGAGGGTAAACATAATCATGATGTACCTGCTGCTAGAAACAGCAGCCACAGCACAGCTAGTAGCAATTCAATGCCATTAAAACCGCATAATGTCGTGCCAGAGAAGCATCCTTTGCTTAAAGATAAGGATTTTGGAGGTAATGACCAAAGACCTGTACATTTGCGCTTAAAAGAAGAGCAAATTATAGTATAA 1563 0.4946 MYTPNADSGTAPHPRPTITLPPRPSAEAFFSAAGGASPGPMTLVSSFFGSDAAADCRSFSQLLAGAMASPMAFSAAAASAADNSGKDDDGPHKGFKQSRPMNLVIARSPVFTVPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHMHMQADYQMPSVTAPTEPPVQQLSFALNEASEQQVVSCVSEPRNAQLEAPELSQADKKYQPSSQAIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCVVKKKVERAPDGHITEIIYKGQHNHEKPQANRRAKDNSDSNGNVTVQPKSESNSQGWVGQLNKLSENIPNSSVPESDQTSNQGAPRQLLPGSNESEEVGIVDNREEADDGEPNPKRRNTDVGVSEVPLSQKTVTESKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHSTASSNSMPLKPHNVVPEKHPLLKDKDFGGNDQRPVHLRLKEEQIIV* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2146 520 ProSiteProfiles WRKY domain profile. 401 466 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g2146 520 MobiDBLite consensus disorder prediction 292 346 - -
Gso18g2146 520 MobiDBLite consensus disorder prediction 275 385 - -
Gso18g2146 520 MobiDBLite consensus disorder prediction 1 33 - -
Gso18g2146 520 SMART WRKY_cls 406 465 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g2146 520 SMART WRKY_cls 226 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g2146 520 Gene3D WRKY domain 390 467 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso18g2146 520 Gene3D WRKY domain 212 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso18g2146 520 Pfam WRKY DNA -binding domain 407 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g2146 520 Pfam WRKY DNA -binding domain 227 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g2146 520 ProSiteProfiles WRKY domain profile. 221 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g2146 520 SUPERFAMILY WRKY DNA-binding domain 398 466 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso18g2146 520 MobiDBLite consensus disorder prediction 205 232 - -
Gso18g2146 520 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 519 IPR044810 GO:0003700
Gso18g2146 520 MobiDBLite consensus disorder prediction 468 484 - -
Gso18g2146 520 MobiDBLite consensus disorder prediction 275 291 - -
Gso18g2146 520 PANTHER WRKY PROTEIN 10 519 - -
Gso18g2146 520 MobiDBLite consensus disorder prediction 462 485 - -
Gso18g2146 520 SUPERFAMILY WRKY DNA-binding domain 225 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2146 Gso-Chr18 54546302 54552756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2146 15 518 WRKY Transcription Factor Family AT2G03340 52.552 1.74e-147 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso18g2146 WRKY 1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2146 - - gmx:100796679 993.416