Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2145 ATGGGTTGCGCGAGCTCGAAGAAGACGGTCGCCGGAGCCGGTGATTCTACGCCGGAGGGGCCGTGCGTGGTGCCTTCAAGTTCTCGGAGGCGGAGCAATAATGGGTTGGGGAGAAACCAAAACGGCGTCGTCGGGGAGGCGCGTGAGGGGGAGGCGCGTGAGGAATGGAGCAAGGGGAGCTTGAGAGAGGGGAATGGGTCTGTGTCTTTAAGGTTGTCGTGTAGGTTTGTGGAGGCTGAGCAGAATGCGGCTGGGTGGCCACCTTGGCTTACATCTGTTGCTGGGGAAGCCATTCAAGGGTGGGTCCCACTCAAAACGGATTCTTTTGAGAGATTGGATAAGATTGGACAAGGTACATATAGCAGTGTATTCCAAGCACGCGAAGTTAAAACTGGGAGGATGGTTGCCCTGAAGAAGGTGCACTTTGACAAATTTCAAGCAGAAAGCATTAGGTTCATGGCAAGAGAAATATTAATTCTCCGCACACTTGACCACCCAAACATCATGAAATTGGAGGGTATAATCACTTCAAAACTATCAAATAGCATATACCTTGTATTTGAATACATGGAGCATGACCTTGCTGGCCTAGTCGCTTCTCCTGACATAAAGTTCACTGACTCACAGATTAAGTGTTACATGAGACAGCTATTAAGTGGAATTGAGCATTGTCACCTTAAAGGTATTATGCATCGAGACATTAAAGTATCTAATATATTAGTGAACAATGAAGGTGTTCTCAAGATAGCAGATTTTGGATTAGCCAATACCCTTGTCCCAAATAGTAAGCAACCCTTAACAAGTCGTGTGGTGACTCTATGGTATCGTCCTCCTGAGAACTTGTTGGGATCAACAAATTATGGAGTTTCAGTGGATCTATGGAGTGTTGGTTGTGTATTTGCTGAACTTTTTCTGGGGAAGCCCATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTCAAGCTTTGTGGTTCTCCACCAGAGGAGTTCTGGAAAAAGAATAAGCTTCCTCTGGCCACAATGTTTAAGCCTCGGACTAATTACAAAACTTCTCTTAAGGAGCGGTGTAGGGGTTTTCCTGCAACTGCTGTAAACCTACTAGAGACCTTACTTTCCATTGATCCCTCTAAACGTGGGACTGCCTCCTCTGCCCTCATGTCTGAGTATTTCAGCACCAAGCCATATGCTTGTAATCCATCACTCCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGCCAAAAATTGGGAAGATGTGCGCAGGAAAAAGAATGGAGGTAAAGTGAGAGAGGCCGTAACATCAAAAAGGCAAAGACAAGTCCACAAAGTTTCCCATGACCATATCAATTTCAACAAACCAGCTTTGAAAGAGAATGATTCTCAAAATGCTGCTCCAGATGATGGTAGGGCACATGTTACAAAAGGAAAAGTAGCAGGAGCTATGCATAAAGAGCAACCAAAGCCTTCATATGATGCGAAGTCAGAGGCTGCCCAAGTGGTGAATGGTTGCAATGGATACAGTGTATACTCAGGACCATCACCAGTCTCGGGATCTAGTGGCTTTACATGGGCTAAAAGGAGAAAACCAAAAGCTTCATCCATATTGTCAAATGGCTCAATAAGAAAAGTCAGTGCTCTGGATCCAACCTTTGCAAAAGGCACATATGTTTTAACAGAACATGGGATAGAAGTTTCAGAAAGGAAACATAGTTACAACACAAACCATCAGGATGTGACTTCCAACTATGTATCAAAAAAGTACCTGGCTCCTCGTGTTCAACAAAAATCATTTGATGTAGCTGATACATACAACTCAAATTATTACATGGACTTTGATTTCACAGATAAAATGGATGCTTTGATAGATACTCAGGGCCACAGAAAACATGGTGAGCCTGTGGAGCCAAAAATAATCCCATCAGATAAAAATGATGAGATGTTGCATTGGAATGAACATAGTATGCGACAATGTCTTCGTAAATCGAGGTTTGGAAGAGACCAATGA 2013 0.4377 MGCASSKKTVAGAGDSTPEGPCVVPSSSRRRSNNGLGRNQNGVVGEAREGEAREEWSKGSLREGNGSVSLRLSCRFVEAEQNAAGWPPWLTSVAGEAIQGWVPLKTDSFERLDKIGQGTYSSVFQAREVKTGRMVALKKVHFDKFQAESIRFMAREILILRTLDHPNIMKLEGIITSKLSNSIYLVFEYMEHDLAGLVASPDIKFTDSQIKCYMRQLLSGIEHCHLKGIMHRDIKVSNILVNNEGVLKIADFGLANTLVPNSKQPLTSRVVTLWYRPPENLLGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKNKLPLATMFKPRTNYKTSLKERCRGFPATAVNLLETLLSIDPSKRGTASSALMSEYFSTKPYACNPSLLPKYPPSKEMDAKNWEDVRRKKNGGKVREAVTSKRQRQVHKVSHDHINFNKPALKENDSQNAAPDDGRAHVTKGKVAGAMHKEQPKPSYDAKSEAAQVVNGCNGYSVYSGPSPVSGSSGFTWAKRRKPKASSILSNGSIRKVSALDPTFAKGTYVLTEHGIEVSERKHSYNTNHQDVTSNYVSKKYLAPRVQQKSFDVADTYNSNYYMDFDFTDKMDALIDTQGHRKHGEPVEPKIIPSDKNDEMLHWNEHSMRQCLRKSRFGRDQ* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2145 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Gso18g2145 670 PANTHER CYCLIN-DEPENDENT KINASE 6 564 - -
Gso18g2145 670 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Gso18g2145 670 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2145 670 MobiDBLite consensus disorder prediction 21 40 - -
Gso18g2145 670 MobiDBLite consensus disorder prediction 425 446 - -
Gso18g2145 670 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Gso18g2145 670 PANTHER CELL DIVISION PROTEIN KINASE 6 564 - -
Gso18g2145 670 CDD STKc_CDK9_like 109 393 - -
Gso18g2145 670 Gene3D Transferase(Phosphotransferase) domain 1 192 433 - -
Gso18g2145 670 SUPERFAMILY Protein kinase-like (PK-like) 103 398 IPR011009 -
Gso18g2145 670 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2145 670 SMART serkin_6 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2145 670 MobiDBLite consensus disorder prediction 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2145 Gso-Chr18 54537326 54544218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2145 101 468 Core Cell Cycle Gene Families AT5G10270 44.792 9.50e-107 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso18g2145 Pkinase 1.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2145 - - gmx:100796152 1321.61