Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2144 ATGGAAAAACTTGCCTCTCTTGAAGAGGTCCTTTTGAATGGTGGCTCTAGTGTAAACAACAGTTCTGATCCCAGTAAGACCATAGGAAATGAAAATTTAACTTGCTATTCAAATGCGGGATTTTTCAGCATTCTTACTTTTTCATGGATCAGTCCACTATTAAGTCTTGGCAATGAGAAGACTTTAGATCATGAGGACCTCCCACTGCTTGCCGCCGATGACAGTGCCTATGGGGCTTTTACAACTTTTAGAAACAATCTCGAGTCAGAGTGTGGTAGTGACCTTAGGAGAGTGACCACTCTTAAGCTGGTGAAAGTGTTAATCTTCTCAACATGGAAAGGGATCGTTTTATCCGGTTTGTTAGAATTCTTATGCACCTGTGCTTCTTTTGTTGGACCCTATCTTATTGAAAGCCTTGTTCAATACTTCAACCAGGAACACAAGTTTAAAAATGAAGGCTATATGTTGGCTATAGCATTTGTTGCAGCAAAGCTTGTTGAGTGTCTTCCAGATAGGCACGGCAGATTTAACTTGGAGCAGGTTGGAGTAAGGATGCAATCAATGTTGGTGGCAATGATCTATGCTAAAGGTCTGACTCTTTCCTGTCAATCAAAGGAAGGATACAGCAGTGGGGAAATCATCAACTTAATGACTGTGGATGCGGAAAGGGTCGATGAACTTTGTTGGCACATGCATGCTCCATGGATATGTGTTCTGAAAGTTGCGTTGGCCATGTTAATTCTCTACAAAAGTGTCGGGGTTGCTTCAATAGCTGCTTTTGCTGCCACTGTAATTGTGATGTTGCTAAACCTTCCTGTGGCATCATTGCAAGAAAAGTTCCAAGGTAAGATAATGGAGTTCAAAGATAAAAGAATGAAGGTGACGTCTGAGATTCTAAAGAATATGAAGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTTTTCATCTTAGGAAGACTGAGGAGACATTGCTAAAGAAATTTCTAGTTAGCTCAGCTACTATGACATGTCTCTTGTTTAATGCCCCAACTTTTATTGCTGTTGTCACTTTCAGTGCTTGCTTTCTTATAGGCATCCCACTTGAATCAGGGAAAATCTTATCTGCACTTGCAACATTCGAAATTCTTCAAATGCCCATATACAGTCTTCCTGACACAATTTCAATGATTGCACAAACTAAGGTTTCTTTTGATAGGATTACATCATTTCTTAGTCTAGATGACTTGCAGACTGATGTAGTGGAGAAACTTCCACGGGGTAGTTCTGACATAGCAATTGAATTAGTAAATGGAAATTTCTCTTGGAATTTATCTTCCCTTAACACAACATTGAAAAACATAAATCTCACAGTTTTTCATGGTATGAGGGTTGCTGTTTGTGGTACTGTTGCATCAGGCAAATCTAGCTTACTTTCTTGTATAATAGGTGAAATACCTAAGATATCTGGGACCCTAAAGGTGTGTGGATCAAAGGCTTATGTTTCTCAATCACCATGGGTAGAAAGTGGCAAGATAGAAGAGAACATATTATTTGGCAAGGAGATGGACAGGGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCCTTGACAAAAGACCTGGAGGTTCTACCATTTGGTGATCAAACCATCATTGGAGAGAAAGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCCCGTGCTCTTTACCAAGATGCTGACATTTATTTGTTTGATGATCCCTTCAGTTCTGTGGATGCTCATACAGGATCTCATCTCTTTAGGGAGTGTCTGCTTGGCCTTCTAAAAACAAAAACTGTGATATACATAACTCATCAAGTAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAGAGAAGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTCAGGTCAGACACTGATTTTATGGAACTTGTAGGTGCACATAGAGAAGCTTTGTCTTCAGTTATGTCCTCAGAGAGAATTCCCACACTTGAAACAGTGAATATCTCCACAAAGGACTCAGATTCATTAAGATATTTTGAACTTGAGCAAGAAGAGAAAAACATAGATGACCATCATGATAAGTCAGATGACACAGTTAAGCCAAAAGGCCAACTGATTCAAGAGGAAGAACGGGAAAAGGGTAGAGTTCGGTTTAAGGTCTACTGGAAATACATCACAACAGCTTATGGAGGAGCTTTTGTACCCTTTATATTGCTCTCACAGACACTTACCACGGTTTTTCAGATTGGAAGCAACTATTGGATGACTTTAGAAACTCCTATTTCTGCAACTGCAGAAACTGGTATTGAAAGCTTTACCCTTATGGTTGTCTATGTTGCTTTGGCGATTGGAAGTTCATTTTTCAACCTTGTCATATCAGTTCTTAGAGAGATAGCTGGATACAAGACAGCCACTATACTCTTTAATAAAATGCATTTTTGCTTTTTCCGAGCACCAATGTCATTTTTTGATGCCACCCCAAGTGGGAGAATCCTTAATAGAGCTTCAACAGATCAAAACACAATAGACATAAGCATTTCATATTTGGTATGGGTATTTACCTTCATTTTGATTCACCTCTTGGGAACTATTGTTGTGATGTCTCAAGCTGCATGGCAGGTGTTTATAGTATTGATTCCTATCACGGCCACTTGCATATGGTACCAGCGATACTATTCTGCATCAGCACGGGAACTGGCACGATTAGTTGGTATATGCCAAGCTCCTGTTATACAACATTTTTCGGAAACAATTTCTGGATCAACAACCATAAGATGTTTTGAGCAAGAATCGAGATTTAATGACATACATATGAAACTGATAGATAGATATTCTCAACCCAGATTATACAGTGCCAGTGCAATAGAATGGTTGGCTTTCAGATTGGATATTCTATCCATTACCACATTTGCCTTCTGTTTGGTTTCCTTGATATCTTTTCCAAATTCAATTACTGCTCCGGGCATTGCGGGATTAGCTGTGACGTATGGGCTTAATCTAAATGAACTACAATATAATTTAATCTGGGATCTTTGCAATTTGGAAAATGAATTTATATCCGTAGAAAGAATACTTCAATACACCTCCATCCCAAGTGAAGCTCCTCTTACAATAAAAGACAACCAACCAGATCATTCTTGGCCATCATTTGGAGAAGTTCATATCCAGGATTTACAGGTTCGATATGCGCCTCATTTGCCTCTAATTTTACGTGGTCTTACTTGCACTTTCGCTGCTGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTAGTGCTAACACTTTTTCGACTTCTTGAACCTGTTGCTGGACAGATATTGATAGATAGTGTTGACATATCTTTGATTGGAATTCATGATTTGAGGTCCAGACTGAGCATTATTCCACAGGATCCAACAATGTTTGAAGGGACTGTTCGAAGCAACTTGGACCCCCTGGAAGAATACACAGATGAACAGATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAGAAAGAAGGGAAACTTGACTCCTCAGTTACTGAGAATGGAGAAAATTGGAGTATGGGCCAAAGGCAATTGGTGTGCCTCGGCCGCGTTCTACTAAAGAAAAGCAAGATATTGGTGCTTGATGAAGCTACTGCCTCAGTTGATACAGCCACAGATAATATTATTCAGCAAACAGTGAAGCAACATTTTTCAGAATGTACAGTCATTACCATTGCTCATAGAATAACTTCAATCCTGGATAGTGACATGGTTCTGTTTCTAAATCAAGGGCTCATTGAGGAATATGATTCACCAAAGAAACTACTTAAGAACAATTCTTCATCTCTTGCTCAACTAGTTGCAGAATACACAAGGAGATCAAACTGTGGTTTTGGAACTTAA 3921 0.3928 MEKLASLEEVLLNGGSSVNNSSDPSKTIGNENLTCYSNAGFFSILTFSWISPLLSLGNEKTLDHEDLPLLAADDSAYGAFTTFRNNLESECGSDLRRVTTLKLVKVLIFSTWKGIVLSGLLEFLCTCASFVGPYLIESLVQYFNQEHKFKNEGYMLAIAFVAAKLVECLPDRHGRFNLEQVGVRMQSMLVAMIYAKGLTLSCQSKEGYSSGEIINLMTVDAERVDELCWHMHAPWICVLKVALAMLILYKSVGVASIAAFAATVIVMLLNLPVASLQEKFQGKIMEFKDKRMKVTSEILKNMKILKLQAWEMKFLSKIFHLRKTEETLLKKFLVSSATMTCLLFNAPTFIAVVTFSACFLIGIPLESGKILSALATFEILQMPIYSLPDTISMIAQTKVSFDRITSFLSLDDLQTDVVEKLPRGSSDIAIELVNGNFSWNLSSLNTTLKNINLTVFHGMRVAVCGTVASGKSSLLSCIIGEIPKISGTLKVCGSKAYVSQSPWVESGKIEENILFGKEMDREKYEKVLEACSLTKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSSVDAHTGSHLFRECLLGLLKTKTVIYITHQVEFLPDADLILVMREGRITQSGKYNDILRSDTDFMELVGAHREALSSVMSSERIPTLETVNISTKDSDSLRYFELEQEEKNIDDHHDKSDDTVKPKGQLIQEEEREKGRVRFKVYWKYITTAYGGAFVPFILLSQTLTTVFQIGSNYWMTLETPISATAETGIESFTLMVVYVALAIGSSFFNLVISVLREIAGYKTATILFNKMHFCFFRAPMSFFDATPSGRILNRASTDQNTIDISISYLVWVFTFILIHLLGTIVVMSQAAWQVFIVLIPITATCIWYQRYYSASARELARLVGICQAPVIQHFSETISGSTTIRCFEQESRFNDIHMKLIDRYSQPRLYSASAIEWLAFRLDILSITTFAFCLVSLISFPNSITAPGIAGLAVTYGLNLNELQYNLIWDLCNLENEFISVERILQYTSIPSEAPLTIKDNQPDHSWPSFGEVHIQDLQVRYAPHLPLILRGLTCTFAAGAKTGIVGRTGSGKSTLVLTLFRLLEPVAGQILIDSVDISLIGIHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDMCQLGDEVRKKEGKLDSSVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSECTVITIAHRITSILDSDMVLFLNQGLIEEYDSPKKLLKNNSSSLAQLVAEYTRRSNCGFGT* 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2144 1306 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 430 653 IPR003439 GO:0005524
Gso18g2144 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1051 1286 IPR027417 -
Gso18g2144 1306 ProSitePatterns ABC transporters family signature. 555 569 IPR017871 GO:0005524
Gso18g2144 1306 Gene3D - 1043 1296 IPR027417 -
Gso18g2144 1306 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 5 1306 - -
Gso18g2144 1306 CDD ABC_6TM_ABCC_D1 117 404 IPR044746 GO:0140359
Gso18g2144 1306 Gene3D - 411 671 IPR027417 -
Gso18g2144 1306 Pfam ABC transporter transmembrane region 745 982 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso18g2144 1306 Pfam ABC transporter transmembrane region 116 383 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso18g2144 1306 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 735 1023 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso18g2144 1306 SMART AAA_5 1086 1271 IPR003593 -
Gso18g2144 1306 SMART AAA_5 457 630 IPR003593 -
Gso18g2144 1306 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1060 1294 IPR003439 GO:0005524
Gso18g2144 1306 SUPERFAMILY ABC transporter transmembrane region 107 404 IPR036640 GO:0005524|GO:0016021
Gso18g2144 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 427 652 IPR027417 -
Gso18g2144 1306 SUPERFAMILY ABC transporter transmembrane region 741 1042 IPR036640 GO:0005524|GO:0016021
Gso18g2144 1306 Gene3D ABC transporter type 1, transmembrane domain 93 410 IPR036640 GO:0005524|GO:0016021
Gso18g2144 1306 Gene3D ABC transporter type 1, transmembrane domain 704 1041 IPR036640 GO:0005524|GO:0016021
Gso18g2144 1306 Pfam ABC transporter 1078 1225 IPR003439 GO:0005524
Gso18g2144 1306 Pfam ABC transporter 448 582 IPR003439 GO:0005524
Gso18g2144 1306 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 116 396 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso18g2144 1306 CDD ABCC_MRP_domain2 1058 1278 - -
Gso18g2144 1306 CDD ABCC_MRP_domain1 430 630 - -
Gso18g2144 1306 CDD ABC_6TM_ABCC_D2 741 1035 IPR044726 GO:0140359
Gso18g2144 1306 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 1306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2144 Gso-Chr18 54522228 54532563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2144 430 677 Calmodulin-binding Proteins AT2G36910 28.731 6.80e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2144 - K05666 gmx:100795627 2548.85