Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2142 ATGGCAAGGAAGAGAAAGGTTACTGAAGCAGTTGAAGAGAGGAATCCATGTGAGGCAACAATGGCATGGGAAGAGGTGATGAAGGAAGCTGCTGAACTAGGAAGTGCCAGGAGATTGAGGAAGAAGTTTGTTGGGGTGAGACAAAGGCCATCAGGAAGATGGGTGGCTGAGATAAAAGATACCATTCAGAAGATAAGAGTGTGGTTAGGAACCTTTGATACAGCAGAAGAAGCTGCAAGAGCCTATGATGAAGCTGCTTGCCTTCTTCGCGGCGCCAACACTAGAACAAACTTCTGGCCTAGTTCTCAATCTTCCTCAACTCCTGCTCTTCCCTCAAAGATTACCAATCTCCTCCTTCAAAGGCTTAAAGCAAGAAACAACAATAACAATAACAACCCTTGTTCTCTTTCTTCTTCCTCCTCCTCCAGTTCTCTTTTCATCAATCACCAACAAAAGCAGCTAGAAGATGTATGTGGAACTGAGTCAACATTTTTCTCAATGGACCAGTTCTCGGATTTCCTTAATGACCCTGAAGATTACAGCACAAGCAACGATGAGTTTAGCAATGATAGTGCACAAATTGATTACATCACAAGTAGTCTTGAATCATGTTTAAATGGAAATGATGATTGCAGGGAAAAAGAAAAAGAAATGGAAATGGAATTTGACTTCAGCAGTGTGACACCAACATCAAGTGCTGATGTAAATTCAGGAGGGGAGAGAGAGGAAGAGAGTGAAGAAGCCACTGATTTGAGTGCTCAGGATTTTCAGTTTCTTGACAATGATGTTCCACCCGGTTACTTTTATTCACCTTTTGAGATTGCTGAAGATATTGAGGAGCAATTGGAGCCAGAGAACTATGGTGATGAGCCTTCAATGCTGAGAGAAGTAATGAAGAGAATGAAATATGAGAGGAAGTTTTCAGCTTCTCTTTATGCCTTCAATGGAATACCTGAGTGCTTGAAGTTGAAACTTGAGTCAGGAAACACAAATGGAAGAGGGGTTTCTATTTCTAATCAACTAACCAACCTCAAGATGGCTTGTAGCAAAAACAAAAATGAGGCTAATAAGAAGAATGAAGAATACATTGAAGCAATGGATAGGAAAGAGGAAGAAAACCCACAAACATCAATTGGCATGGAATGCTCTTCCCTCTCTTTCTCATCCAGGATTGATGATGATGATGGAGAACTGTTGCTATGGAATTCACTTGATCTTCCTACTCTTTGCTTTGTTAACTAG 1242 0.4098 MARKRKVTEAVEERNPCEATMAWEEVMKEAAELGSARRLRKKFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPSSQSSSTPALPSKITNLLLQRLKARNNNNNNNPCSLSSSSSSSSLFINHQQKQLEDVCGTESTFFSMDQFSDFLNDPEDYSTSNDEFSNDSAQIDYITSSLESCLNGNDDCREKEKEMEMEFDFSSVTPTSSADVNSGGEREEESEEATDLSAQDFQFLDNDVPPGYFYSPFEIAEDIEEQLEPENYGDEPSMLREVMKRMKYERKFSASLYAFNGIPECLKLKLESGNTNGRGVSISNQLTNLKMACSKNKNEANKKNEEYIEAMDRKEEENPQTSIGMECSSLSFSSRIDDDDGELLLWNSLDLPTLCFVN* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2142 413 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Gso18g2142 413 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Gso18g2142 413 MobiDBLite consensus disorder prediction 221 253 - -
Gso18g2142 413 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Gso18g2142 413 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 346 - -
Gso18g2142 413 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Gso18g2142 413 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Gso18g2142 413 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Gso18g2142 413 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Gso18g2142 413 Coils Coil 352 372 - -
Gso18g2142 413 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Gso18g2142 413 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2142 Gso-Chr18 54503754 54505430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2142 40 118 AP2-EREBP Transcription Factor Family AT5G19790 73.418 3.20e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso18g2142 AP2 4.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2142 K09286 - gmx:100796159 725.702