Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2140 ATGGCAGCTTGCATATTCACGGTGGCACAGGACGGGACCGCAGATTTCCAAACGGTGCAGGAGGCTATCGACGCCGTGCCGCTGGGCAACATTCGCCGGACGGTGATTCGGGTCTCGCCGGGAATCTACCGGCAGCCGGTGTATGTTCCCAAGACCAAGAATTTCATCACTCTCGCCGCTCTCAGCCCTGAGGACACCGTGCTTACCTGGAACAACACTGCCACCGGAATTGATCACCACCAACCTGCGAGGGTGATAGGGACTGGGACGTTTGGTTGTGGAACTACCATTGTGGAAGGGGAGGACTTTATTGCTGAGAATATTACTTTCGAGAATTCTGCGCCTGAGGGTTCAGGGCAAGCAGTTGCAATTAGAGTAACAGCAGATCGATGTGCCTTCTACAATTGCAGGTTCCTTGGATGGCAGGACACACTGTACTTACATTACGGTAAACAATATTTGAAAGATTGCTACATTGAAGGAAGTGTGGACTTCATCTTTGGCAATAGCACTGCACTTTTGGAGCACTGTCATATCCACTGCAAGTCTGCGGGCTTCATAACCGCACAGAGCAGAAAATCATCACAGGAAACAACTGGTTATGTATTCTTAAGATGCGTTATCACGGGTAATGGAGGAAATTCATATGCATATCTTGGACGACCGTGGGGCCCTTTTGGAAGGGTGGTCTTTGCATACACTTACATGGATCAATGTATAAGGCATGTTGGCTGGGATAACTGGGGGAAAATGGAGAATGAAAGAAGTGTTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCATCAAAAAGAGTAACCTGGTGTAGAGAATTGTTGGATGAAGAAGCTGAGCAGTTCCTCACGCATCCTTTCATTGATCCAGAACCAGAGAAACCTTGGCTTGCTCAAAGGATGGCCCTCAGGATTCCATATTCTGCTTGA 951 0.4826 MAACIFTVAQDGTADFQTVQEAIDAVPLGNIRRTVIRVSPGIYRQPVYVPKTKNFITLAALSPEDTVLTWNNTATGIDHHQPARVIGTGTFGCGTTIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSSQETTGYVFLRCVITGNGGNSYAYLGRPWGPFGRVVFAYTYMDQCIRHVGWDNWGKMENERSVCFYEYRCFGPGCCPSKRVTWCRELLDEEAEQFLTHPFIDPEPEKPWLAQRMALRIPYSA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2140 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
Gso18g2140 316 Gene3D - 4 311 IPR012334 -
Gso18g2140 316 SUPERFAMILY Pectin lyase-like 3 298 IPR011050 -
Gso18g2140 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Gso18g2140 316 PANTHER PECTINESTERASE 1 315 - -
Gso18g2140 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2140 Gso-Chr18 54481921 54485854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2140 5 309 Carbohydrate Esterase AT5G47500 36.943 2.52e-69 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2140 K01051 - gmx:100795636 665.996