Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2137 ATGGAAGGATCATCAGGTGTGAGGAAAGGCGCATGGAGTCAATTTGAAGATGACCTTCTCAGAGATTGCGTGAACCTTCATGGGGAAGGAAAATGGCAGCTTGTTCCTCAAAGAGCAGGGTTGAACAGATGCCGCAAGAGTTGTAGATTGAGATGGTTGAACTATCTAAAACCAAATATCAAGCGGGGAGATTTTAATGAAGATGAGGTTGATTTGATGATCAGATTGCATAAGCTTTTGGGAAACAGATGGTCCCTAATTGCAGGGAGACTTCCGGGAAGAACTTCAAATGATGTTAAGAACTACTGGAACGCCTACATGCGCCGTAAAGTTCACTCTCACAACAAAGACAACAAAATAAAGAAGCAAGAGACCAAATCAACAGTGAAACCCCACGAAGTGATTAAGCCTATTCCTCGAGTTTTAACAAAAACATCCCCATGGTTGCAAGGGAAATTCATTAATAGTCCCAAAGTTGGTGTTAGTGAAGAAGGTGCAACATCATCAGAGAATTGGTGGGAGACATTGTTAGCTGACAAGGAAGATAATGCAGTATTTAACAACAACAACACGTGCTTCTTTGGTGGGGTGCATGGAGAGCTTAACCTTTGGAACGAAGAGCTTACTTCAATTGATTTTGACTTTGTTACACAAGGTGAACTTGGAGGGATTTCTTCTTGA 681 0.417 MEGSSGVRKGAWSQFEDDLLRDCVNLHGEGKWQLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFNEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNAYMRRKVHSHNKDNKIKKQETKSTVKPHEVIKPIPRVLTKTSPWLQGKFINSPKVGVSEEGATSSENWWETLLADKEDNAVFNNNNTCFFGGVHGELNLWNEELTSIDFDFVTQGELGGISS* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2137 226 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 146 - -
Gso18g2137 226 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Gso18g2137 226 Gene3D - 9 61 - -
Gso18g2137 226 CDD SANT 11 56 IPR001005 -
Gso18g2137 226 CDD SANT 65 107 IPR001005 -
Gso18g2137 226 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Gso18g2137 226 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Gso18g2137 226 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Gso18g2137 226 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Gso18g2137 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Gso18g2137 226 SMART sant 8 58 IPR001005 -
Gso18g2137 226 SMART sant 61 109 IPR001005 -
Gso18g2137 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Gso18g2137 226 Gene3D - 64 136 - -
Gso18g2137 226 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2137 Gso-Chr18 54462752 54464586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2137 2 143 MYB Transcription Factor Family AT1G66370 60.544 3.22e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g2137 Myb_DNA-binding 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2137 - K16166 gmx:100778957 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2137 18 54462752 54464586 Gso9g1933 9 43663441 43665528 GST