Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2133 ATGGGAAGATCACCATGCTGTGACAAGGTGGGTTTGAAGAAGGGACCATGGACGCCAGAGGAAGATCAGAAGCTCTTGGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTGCCAGCAAAAGCTGGACTTCAGAGGTGTGGCAAAAGCTGCAGATTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGGAAATTCAGTATGCAAGAAGAACAAACCATCATTCAACTTCATGCTCTCTTAGGGAACAGGTGGTCTGCAATAGCCACACATTTACCAAAGAGGACAGATAACGAGATCAAGAACTACTGGAACACTCATCTTAAGAAAAGGTTAGACAAAATGGGCATTGACCCTGTGACCCACAAGCCCAAGAACGATGCCCTTGTCTCCACCGAAGGCCCTTCCAAGAGTGCTGCCAACCTTAGCCACATGGCTCAGTGGGAGAGTGCCAGGCTCGAAGCAGAAGCAAGACTGGTCAGAGAATCAAAACTACGTAGTTCTTCACACTCATCATCATCATTGCACCACACCCTAATTGGTACCTCTGCAGTATCATCATCATCTTCTTCAGCTCCAATGATACCCCCATCATCACTTTCTCTTGATCATGCATGGAACAATGGTAGTAGCATTAGTACTACTGTTAATGCAACTAGGGTTAGTGATCTTGAGTCCCCAACATCTACCTTGTCTGAGAATAATGCACCACCAATTAATATTACTAGTGTTATTGAGTTTGTGGGTTCTTCAGAGAGAGGGACGGTGAAGGAAGAGGGAGAGCAAGAGTGGAACAAATTAGGTTATCATGAAAGCTTCACCCATTTGGGAGAATACAAAGATGGCAAGGAGAATTCAATGCCTTTCACGTCTAGTCTGCATGAGTTGACAATGACCATGGCAACCACGTGGGGTTCTAGCACTAGTGGTGCACATGCACATGCACATGTTGCTGAGGAGGGTTGTTTCACCAATCTTTTGCTGAATGCTAACTCCGGTGCCCGGAGTTTGTCGCCACAGGACGGTGGAGAGTCTAATAATTGTCACGATAATGCTCGTAACAGTGGCAGTGGTAGTAGCAATGCTGACTTATATGAAGAAAACAAGAATTATTGGAACAACATTCTTAATTTGATGAATTATTCTTCCCCTTCGGATTCACCCATGTTTTGA 1185 0.4489 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSMQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLDKMGIDPVTHKPKNDALVSTEGPSKSAANLSHMAQWESARLEAEARLVRESKLRSSSHSSSSLHHTLIGTSAVSSSSSSAPMIPPSSLSLDHAWNNGSSISTTVNATRVSDLESPTSTLSENNAPPINITSVIEFVGSSERGTVKEEGEQEWNKLGYHESFTHLGEYKDGKENSMPFTSSLHELTMTMATTWGSSTSGAHAHAHVAEEGCFTNLLLNANSGARSLSPQDGGESNNCHDNARNSGSGSSNADLYEENKNYWNNILNLMNYSSPSDSPMF* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2133 394 MobiDBLite consensus disorder prediction 121 140 - -
Gso18g2133 394 Gene3D - 13 66 - -
Gso18g2133 394 CDD SANT 69 112 IPR001005 -
Gso18g2133 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso18g2133 394 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso18g2133 394 CDD SANT 16 61 IPR001005 -
Gso18g2133 394 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 389 - -
Gso18g2133 394 MobiDBLite consensus disorder prediction 338 366 - -
Gso18g2133 394 Gene3D - 69 136 - -
Gso18g2133 394 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso18g2133 394 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso18g2133 394 SMART sant 13 63 IPR001005 -
Gso18g2133 394 SMART sant 66 114 IPR001005 -
Gso18g2133 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 389 - -
Gso18g2133 394 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso18g2133 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso18g2133 394 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2133 Gso-Chr18 54414359 54417611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2133 1 394 MYB Transcription Factor Family AT3G01140 52.206 8.18e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g2133 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2133 K09422 - gmx:100794047 772.696