Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2132 ATGGGATCGATAGAGAACGCTTCCAAACCAAGGAAGGAAAATCCGAAATTTGAATTGCCAGCGGGTTTTAGATTTCATCCAACAGATGAAGAACTCATAAATCAATACCTCACAAAGAAGGTTGTTGACAACTGTTTCTGTGCTATAGCCATTGGTGAGGTTGATTTGAACAAGTGTGAGCCATGGGATTTGCCTGGGTTGGCTAAAATGGGTGAAACTGAGTGGTATTTTTTCTGTGTGAGGGACAGAAAATTCCCAACAGGTATAAGGACTAATAGGGCCACTGATATTGGTTATTGGAAAGCCACAGGAAAAGACAAGGAGATAATAATGGAGAATGCACTCATTGGGATGAAGAAAACCTTGGTTTTCTACAAGGGAAGAGCTCCTAAAGGTGAAAAGACAAACTGGGTTATGCATGAATATAGGTTGGAAGGGAAACATAATCAACCCAAACCTGGAAAGAGTGAATGGGTGATTTGTAGAGTCTTTGAGAAGAGTCGTTGTGGGAAGAAAATGCATGTTCCAAAGTGTGGGAGGTTCAACAACCCCTTTGGAGAGGAACCATCATCAGGTGCTTCTCTATTGCCTCCTTTGATGGATTCTTCTCCATACAACAGTGAAACAAGAACCACCACTGCTGGGGAGTTGTCTCAGGTGACATGCTTCTCTGATCCAAATCAAACTGAGGATCAGAACAACACACATGATGACATTGTTGATAGCATGGAAACTCCTATTTTGAACTTCTCACCCTTTTCAAGGCCTGATGATGCATCCACTTTGGCCAAAGCAACCCTTTCTTCAGCCTCAAACCAATCAGCACAGATTGCACACCAAATTGGGGACTCACAGTTCCCAGATTATTGTTATGCGCCTCAAGAACCGTCCATGTTGAGGATGCTGATGGAAAACCATGAACCCTGTGCGAAGCAAACTCAGAAAGAAGAGTTTCCTGAGGGAAGAGACTTTGATGGAGATATCTCATCTATGATATACAGCAGTGACATGATAAACAGAATGTTTGGGAATCAAGAACGTTCTTCATCAGCTTCTGCAGGGCCTGTGGACACTGATTTCCTATGGAATTACTGA 1095 0.4274 MGSIENASKPRKENPKFELPAGFRFHPTDEELINQYLTKKVVDNCFCAIAIGEVDLNKCEPWDLPGLAKMGETEWYFFCVRDRKFPTGIRTNRATDIGYWKATGKDKEIIMENALIGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKHNQPKPGKSEWVICRVFEKSRCGKKMHVPKCGRFNNPFGEEPSSGASLLPPLMDSSPYNSETRTTTAGELSQVTCFSDPNQTEDQNNTHDDIVDSMETPILNFSPFSRPDDASTLAKATLSSASNQSAQIAHQIGDSQFPDYCYAPQEPSMLRMLMENHEPCAKQTQKEEFPEGRDFDGDISSMIYSSDMINRMFGNQERSSSASAGPVDTDFLWNY* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2132 364 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 361 - -
Gso18g2132 364 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Gso18g2132 364 SUPERFAMILY NAC domain 16 166 IPR036093 GO:0003677|GO:0006355
Gso18g2132 364 Gene3D NAC domain 28 170 IPR036093 GO:0003677|GO:0006355
Gso18g2132 364 ProSiteProfiles NAC domain profile. 19 166 IPR003441 GO:0003677|GO:0006355
Gso18g2132 364 PANTHER ANAC079/ANAC080/ATNAC4 PROTEIN 4 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2132 Gso-Chr18 54393069 54398297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2132 18 364 NAC Transcription Factor Family AT5G07680 48.864 8.93e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso18g2132 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2132 - - gmx:100790888 749.969