Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2128 ATGTTGACTCACATCTATTTATTCCTTCCCAATTTCCTCCTCCATTTCCACAAACAACTTCTTTCAAGGAAAATGGCTCTTCTTGGATTTCTTCTGGGACTTTTCTACATGATCTCACATGTCAAGGGGTATGGTTTTGGAGGTTGGACCAATGCACATGCCACCTTCTATGGAGGGGGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGTTATGGAAATCTGTATAGCCAAGGTTATGGAACTGATACAACAGCACTGAGCACTGCACTGTTCAACAATGGCTTAAGCTGTGGTGCATGCTTTCAAATTAAATGTGCGAATGACCCACAATGGTGCCTTCCTGGCTCCATCATAGTCACTGCCACAAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCACTTTGATCTTTCTCAACCTGTTTTCCAGCACATTGCTCAATATAGGGCTGGGATTGTGCCTGTAGTTTACAGAAGGGTGAGGTGCAGGAGAAAAGGTGGAATCAGGTTCACCATCAATGGCCACTCTTACTTCAATTTAGTCCTTGTAACCAATGTTGGAGGGGCTGGTGATGTGCATGCTGTGTCCATCAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGGAACTGGGGGCAAAACTGGCAAAGCAACTCCTACTTGAATGGTCAGAGTCTTTCCTTTGTAGTCACCACCAGCAATGGACACAGTGTGGTGTCATACAATGTTGCCCCAGCTGGTTGGTCCTTTGGGCAGACCTACACTGGGAGGCAGTTCAACTACTAA 798 0.4662 MLTHIYLFLPNFLLHFHKQLLSRKMALLGFLLGLFYMISHVKGYGFGGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTTALSTALFNNGLSCGACFQIKCANDPQWCLPGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVVYRRVRCRRKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVSIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPAGWSFGQTYTGRQFNY* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2128 265 PANTHER EXPANSIN-A15 21 264 IPR002963 GO:0009664
Gso18g2128 265 Gene3D - 171 263 IPR036749 -
Gso18g2128 265 SUPERFAMILY PHL pollen allergen 168 260 IPR036749 -
Gso18g2128 265 PRINTS Expansin signature 79 93 IPR002963 GO:0009664
Gso18g2128 265 PRINTS Expansin signature 106 117 IPR002963 GO:0009664
Gso18g2128 265 PRINTS Expansin signature 118 128 IPR002963 GO:0009664
Gso18g2128 265 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Gso18g2128 265 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Gso18g2128 265 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Gso18g2128 265 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Gso18g2128 265 PRINTS Expansin signature 217 238 IPR002963 GO:0009664
Gso18g2128 265 PRINTS Expansin signature 246 262 IPR002963 GO:0009664
Gso18g2128 265 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Gso18g2128 265 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Gso18g2128 265 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Gso18g2128 265 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Gso18g2128 265 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Gso18g2128 265 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576
Gso18g2128 265 SUPERFAMILY Barwin-like endoglucanases 48 189 IPR036908 -
Gso18g2128 265 PANTHER EXPANSIN 21 264 - -
Gso18g2128 265 Pfam Lytic transglycolase 84 161 IPR009009 -
Gso18g2128 265 Gene3D - 39 167 IPR036908 -
Gso18g2128 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 171 IPR007112 -
Gso18g2128 265 SMART dpbb_1 84 161 IPR007112 -
Gso18g2128 265 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Gso18g2128 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 260 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2128 Gso-Chr18 54349659 54351948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2128 24 263 Expansin Gene Family AT2G03090 77.108 3.04e-138 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2128 K20628 - gmx:100791784 548.895