Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2117 ATGGAGGGGACCACCAGCCAAAGCACGTTTACCTTCATCCCTAGCACAATTGAGACACCTAGTCCAAGCATCCCTGAGATTTCATCGTCATCACCTTCCCCTGGCGGCTCTCTTGCAAGAGTTGCACAAAGTTACCCTCCTGGATTTCCCAGAAAGGTATTTGCGGAGGTTATAGGGACATTTCTGTTAGTGTTTGTGGGGAGTGGTTCTGCTGGGCTTAGCAAGATTGATGAAAGCATGGTGTCAAAGCTTGGAGCTTCACTTGCAGGAGGACTCATAGTGACGGTCATGATTTACTCAATTGGACACATCTCAGGGGCACACATGAACCCAGCTGTTTCGCTTGCTTTTACCGCCGTGAGGCATCTTCCGTGGCCACAGCTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATACACATTGCGAGAGCTGTTACGGCCATCAGATGAGATTGGGGGAACTTCACCTGCTGGATCACACATTCAAGCCCTAACCATGGAAATGGTGAGCACATACACCATGGTGTTCATTTCCATGGCCGTGGCCACTGACTCAAACGCGACAGGACAGCTATCAGGAGTTGCAGTAGGTTCTTCTGTTTGCATAGCAAGCATTGTAGCCGGACCAATATCAGGGGGATCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCAACATCATACTACAAGGGACTTTGGGTATATTTTGTTGGACCGATTACTGGGGCAGTTTTAGCAGCATGGTCTTACAATGTGATTAGGGACACTGAACACCCTGGTTTTCCCATTTCACTATCCTCCATTTCATCCAAGGTGCGCCAAAGCATTGGTGGAACCGAACAAAAAAGCGACCAAAGATGCTTGGTGTGA 888 0.4854 MEGTTSQSTFTFIPSTIETPSPSIPEISSSSPSPGGSLARVAQSYPPGFPRKVFAEVIGTFLLVFVGSGSAGLSKIDESMVSKLGASLAGGLIVTVMIYSIGHISGAHMNPAVSLAFTAVRHLPWPQLPFYVAAQLTGAISASYTLRELLRPSDEIGGTSPAGSHIQALTMEMVSTYTMVFISMAVATDSNATGQLSGVAVGSSVCIASIVAGPISGGSMNPARTLGPAIATSYYKGLWVYFVGPITGAVLAAWSYNVIRDTEHPGFPISLSSISSKVRQSIGGTEQKSDQRCLV* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2117 295 ProSitePatterns MIP family signature. 108 116 IPR022357 -
Gso18g2117 295 Pfam Major intrinsic protein 49 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso18g2117 295 Gene3D Glycerol uptake facilitator protein. 33 265 IPR023271 -
Gso18g2117 295 SUPERFAMILY Aquaporin-like 45 265 IPR023271 -
Gso18g2117 295 MobiDBLite consensus disorder prediction 1 38 - -
Gso18g2117 295 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso18g2117 295 PRINTS Major intrinsic protein family signature 90 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso18g2117 295 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso18g2117 295 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso18g2117 295 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso18g2117 295 PRINTS Major intrinsic protein family signature 239 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso18g2117 295 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 43 274 - -
Gso18g2117 295 MobiDBLite consensus disorder prediction 1 39 - -
Gso18g2117 295 PANTHER AQUAPORIN NIP2-1 43 274 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2117 Gso-Chr18 54218949 54224107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2117 51 265 Major Intrinsic Protein MIP AT5G37820 47.222 8.70e-65 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2117 K09874 - gmx:100788071 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2117 18 54218949 54224107 Gso9g1955 9 43898002 43902897 GST