Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2115 ATGGACATAACCCCAACAACAACGATCATCAACACCACCACCACTCCCAGTGCAGCAAAATCCCCGGAACATGAAACAGAAACACCGACCAGGATCACCACCCCCATCACTCCCACAACGACAAAAACCTTATCTTTCTCGAATGGTGTCCTCAAACGCCACCACCACCACCACCTCCACCACCCTATGCCTGCGGTGGTTACCTACAAAGAATGCCTCAAAAACCACGCCGCCAACTTGGGTGGCCACGCTCTAGACGGCTGCGGCGAGTTCATGCCCTCTCCGACCGCCACCGCCGCCGACCCCAGCTCCATAAAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCGGAGGACCCCCCCATCACCTCCAACACCACGCACGTCATCGAGTACCAGCCCCACCACCGCCACCACCCTCCGCCGCCGCTTCACGCGGCGGCGGCAGCACGCAGCCCCAATTCCGCTTCCCCGCCGCCGATCTCCTCCTCTTACTATCCCTCCGCGCCGCACATGCTCCTCGCCCTCTCCGCCGGGCTAGCGGCTCCGCCGGAGAGCACCGCAGCGCCTTCCGCAGCGCTCAGCAGAAAGCGTTTCCGAACGAAGTTCAGTCAGGAGCAGAAGGAGAAGATGCACAAGTTCGCGGAGAAAGTGGGGTGGAAGATTCAGAAGCGGGACGAGGATTTGATTCACGAGTTCTGCAACGAGGTTGGGGTCGATAGAAGCGTTCTCAAGGTTTGGATGCATAACAACAAAAACACCTTCGCCAAAAAAGATAACAATATTGTTATTAGTAATGATATTAATATTACTACTAGTAATAATATTAATATCAGTATTATTGATGATAATGATGCAAATGGGGGTGATGTCAAGGTTTTTGAAAACCCTAACAACAACCATGGTAGTGGTAGTGGTGGTGGTGAAGATCCTGCTGAAGATCCGAGTCGTAATCACTATGGTGGGGTGAATGTTGGTGCTAACGGGTCTTCTTCTAGTTCTTGA 1017 0.5447 MDITPTTTIINTTTTPSAAKSPEHETETPTRITTPITPTTTKTLSFSNGVLKRHHHHHLHHPMPAVVTYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPEDPPITSNTTHVIEYQPHHRHHPPPPLHAAAAARSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPSAALSRKRFRTKFSQEQKEKMHKFAEKVGWKIQKRDEDLIHEFCNEVGVDRSVLKVWMHNNKNTFAKKDNNIVISNDINITTSNNINISIIDDNDANGGDVKVFENPNNNHGSGSGGGEDPAEDPSRNHYGGVNVGANGSSSSS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2115 338 Pfam ZF-HD protein dimerisation region 67 121 IPR006456 -
Gso18g2115 338 MobiDBLite consensus disorder prediction 137 167 - -
Gso18g2115 338 MobiDBLite consensus disorder prediction 1 41 - -
Gso18g2115 338 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 291 - -
Gso18g2115 338 Gene3D - 187 261 - -
Gso18g2115 338 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 120 IPR006456 -
Gso18g2115 338 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 68 120 IPR006456 -
Gso18g2115 338 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 200 257 IPR006455 -
Gso18g2115 338 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 291 - -
Gso18g2115 338 SUPERFAMILY Homeodomain-like 192 261 IPR009057 -
Gso18g2115 338 MobiDBLite consensus disorder prediction 293 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2115 Gso-Chr18 54176516 54178158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2115 8 256 ZF-HD Transcription Factor Family AT5G15210 55.600 1.83e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso18g2115 ZF-HD_dimer 2.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2115 - - gmx:100786999 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2115 18 54176516 54178158 Gso9g1957 9 43936106 43937725 GST
Gso13g0430 13 16106839 16108453 Gso18g2115 18 54176516 54178158 PCT
Gso19g0199 19 2541489 2543122 Gso18g2115 18 54176516 54178158 PCT
Gso18g2115 18 54176516 54178158 Gso13g0430 13 16106839 16108453 PCT
Gso18g2115 18 54176516 54178158 Gso19g0199 19 2541489 2543122 PCT