Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2114 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGGGTCAAGAAAGGGCCTTGGACTCCTGAAGAAGACATCATATTGGTGTCTTATATTCAGGAACATGGTCCTGGAAATTGGAGGGCAGTTCCTGCCAAAACAGGGTTGTCAAGATGCAGCAAGAGTTGCAGACTTAGATGGACTAATTACCTGAGGCCAGGAATCAAACGGGGCAACTTCACAGAACAAGAGGAGAAGATGATAATCCATCTTCAAGATCTTTTAGGAAACAGATGGGCTGCAATAGCTTCATACCTTCCACAGAGAACAGACAATGACATAAAGAACTATTGGAACACCCATTTGAGAAAGAAGCTGAAGAAGATGCAAGTAGGTTGTGAAGGTGGTAGCTTTGGAGAAGGGTTTTCAGCCTCAAGGCAAATCCCTAGAGGCCAGTGGGAAAGAAGGCTCCAAACTGATATCCAAATGGCAAAGAGAGCCCTCAGTGAAGCTCTTTCACCAGAGAAGCCATCTTGTAATTTATCTGCCTCAAACTCAAACCCTTCAGATAGTAGCAGCTCCTTCTCTTCCACAAAACCAACAACAACACAAACTGTGTGCTATGCCTCAAGTGCTGACAACATAGCTAGAATGCTAAAGGGTTGGATGAAAAACCCACCAAAGTCCTCAAGAACAAACTCATCATCTGTGACTCAGAACTCCTTCAACAACTTTGCTGCAGCAGGTGCTGATACTGCTTCTAGTATTGGAGCAAAGGGACCACCAAGCAGTGCTGAATTGTCTGAAAACAATTTTGAATCATTGTTTGATTTTGATCAGTCTTTTGAGTCTTCAAACTCTGATGAATTCTCTCGGTCATTGTCTCCTGAGGCCACTGTTTTGCAAGATGAAAGCAAGCCTGATGTTATTGGTGCAGAAATTATGCCATTCTCTTTGCTTGAGAAATGGCTTCTTGATGAGGCTGGTTGCCAAGAGAAATTAGTTGGTTGTGGTGATGATGCCAAGTTTTTCTAA 1005 0.4328 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPAKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKMQVGCEGGSFGEGFSASRQIPRGQWERRLQTDIQMAKRALSEALSPEKPSCNLSASNSNPSDSSSSFSSTKPTTTQTVCYASSADNIARMLKGWMKNPPKSSRTNSSSVTQNSFNNFAAAGADTASSIGAKGPPSSAELSENNFESLFDFDQSFESSNSDEFSRSLSPEATVLQDESKPDVIGAEIMPFSLLEKWLLDEAGCQEKLVGCGDDAKFF* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2114 334 Gene3D - 69 124 - -
Gso18g2114 334 CDD SANT 69 112 IPR001005 -
Gso18g2114 334 CDD SANT 16 61 IPR001005 -
Gso18g2114 334 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso18g2114 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso18g2114 334 SMART sant 66 114 IPR001005 -
Gso18g2114 334 SMART sant 13 63 IPR001005 -
Gso18g2114 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gso18g2114 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gso18g2114 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso18g2114 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso18g2114 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 327 - -
Gso18g2114 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso18g2114 334 MobiDBLite consensus disorder prediction 159 193 - -
Gso18g2114 334 MobiDBLite consensus disorder prediction 165 193 - -
Gso18g2114 334 Gene3D - 13 66 - -
Gso18g2114 334 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2114 Gso-Chr18 54143076 54145246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2114 1 317 MYB Transcription Factor Family AT5G62470 50.696 1.10e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g2114 Myb_DNA-binding 4.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2114 K09422 - gmx:778080 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2114 18 54143076 54145246 Gso9g1958 9 43969741 43971687 GST
Gso13g0432 13 16165716 16167567 Gso18g2114 18 54143076 54145246 PCT
Gso19g0197 19 2488068 2490148 Gso18g2114 18 54143076 54145246 PCT
Gso18g2114 18 54143076 54145246 Gso13g0432 13 16165716 16167567 PCT
Gso18g2114 18 54143076 54145246 Gso19g0197 19 2488068 2490148 PCT