Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2111 ATGTCTAGCCGAAGATCCAGACAACATTCAGGGTCTACAAGGATCTCCGATGACCAAATCATCGAACTTGTTTCCAAATTGCGCCAACTTGTTCCTGAGATTCGCAATAGGCGATCTGATAAGGTTTCAGCGTCAAAGGTCCTACAAGAGACCTGCAACTACATCAGAGGCTTGCACAGAGAGGTGAGTGACTTGAGCGAGCGACTGTCTCAGTTGTTGACCACAATTGATGCTGATAGTGCTGAGGCTGGAATCATTAGGAGCCTACTTAATCAATGA 279 0.4624 MSSRRSRQHSGSTRISDDQIIELVSKLRQLVPEIRNRRSDKVSASKVLQETCNYIRGLHREVSDLSERLSQLLTTIDADSAEAGIIRSLLNQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2111 92 CDD bHLH_AtPRE_like 10 75 - -
Gso18g2111 92 Pfam Helix-loop-helix DNA-binding domain 22 58 IPR011598 GO:0046983
Gso18g2111 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Gso18g2111 92 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
Gso18g2111 92 Gene3D - 2 83 IPR036638 GO:0046983
Gso18g2111 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Gso18g2111 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 18 77 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2111 Gso-Chr18 54098341 54100704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2111 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 72.500 2.83e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso18g2111 HLH 0.00011 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2111 - - gmx:100784537 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2111 18 54098341 54100704 Gso9g1961 9 44017889 44020287 GST
Gso13g0438 13 16307594 16310227 Gso18g2111 18 54098341 54100704 PCT
Gso19g0188 19 2323308 2326161 Gso18g2111 18 54098341 54100704 PCT
Gso18g2111 18 54098341 54100704 Gso13g0438 13 16307594 16310227 PCT
Gso18g2111 18 54098341 54100704 Gso19g0188 19 2323308 2326161 PCT