Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2108 ATGGCCTTCCTACCTTCTCACGGTTTCACGTTTAACACTACTCATGAAGAAGATCACTGCCACTTCCCTCCAACCTCTCTCGACGCCTTCCCCTCTTTGCCACCCCAGCACTTTCAAGGGGGTGCACCTTTCATGTTGAAGCGGTCCATGTCGTTATCAGGCATAGAGAACAAGTGCAATGAAGTACATGGAGATGATGAGTTATCCGATGATGGGGTCTTCCAGAGTGGGGAGAAGAAGAAGAGGTTGAATTTGGAACAGGTGAAGGCCCTTGAGAAGAGTTTTGATCAGGGGAACAAACTTGAGCCAGAAAGGAAAGTGCAGTTAGCTAAGGCTTTGGGGTTGCAGCCAAGACAAGTTGCCATATGGTTTCAGAATAGAAGGGCTAGATGGAAAACCAAGCAATTGGAGAAAGAATATGAAGTCCTCAAGAAGCAGTTTGAAGCAGTCAAGGCTGATAATGATGTTCTTAAGGTTCGGAACCAGAAACTACAGGCAGAGTTACAAGCTGTAAAAAGTAGGGATTGTTGTGAAGCTGGAATAATCAGCCTTAAGAAAGAAACTGAGGGTTCATGGAGCAATGGAAGTGATAACAACTCAGATCTAAATTTAGATCCCTCAAGAGCACTAGGTTTGAACAGTCCTATATCTTCTCATAACATTAAAAACCTACTACCAAATTCGTTAAAGCCAAACAGCATAACCCAACTCCTTCAAGATGATGGCTTGTGCAACATGTTTCACAACATTGATGCACCACAGAACTTTTGGCCCAGGCCTGATCAGCACCACCAGCGTTTCCATTGA 807 0.4436 MAFLPSHGFTFNTTHEEDHCHFPPTSLDAFPSLPPQHFQGGAPFMLKRSMSLSGIENKCNEVHGDDELSDDGVFQSGEKKKRLNLEQVKALEKSFDQGNKLEPERKVQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDVLKVRNQKLQAELQAVKSRDCCEAGIISLKKETEGSWSNGSDNNSDLNLDPSRALGLNSPISSHNIKNLLPNSLKPNSITQLLQDDGLCNMFHNIDAPQNFWPRPDQHHQRFH* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2108 268 Pfam Homeobox associated leucine zipper 134 173 IPR003106 GO:0006355|GO:0043565
Gso18g2108 268 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Gso18g2108 268 Gene3D - 83 132 - -
Gso18g2108 268 PRINTS Lambda-repressor HTH signature 105 114 IPR000047 GO:0003677
Gso18g2108 268 PRINTS Lambda-repressor HTH signature 114 130 IPR000047 GO:0003677
Gso18g2108 268 Pfam Homeodomain 79 132 IPR001356 GO:0003677
Gso18g2108 268 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 268 - -
Gso18g2108 268 SUPERFAMILY Homeodomain-like 70 136 IPR009057 -
Gso18g2108 268 SMART HOX_1 77 138 IPR001356 GO:0003677
Gso18g2108 268 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Gso18g2108 268 CDD homeodomain 79 135 IPR001356 GO:0003677
Gso18g2108 268 Coils Coil 126 174 - -
Gso18g2108 268 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 268 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2108 Gso-Chr18 54059799 54062613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2108 1 261 Homeobox Transcription Factor Family AT3G01220 49.818 3.51e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso18g2108 Homeodomain 5.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2108 K09338 - gmx:100783460 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2108 18 54059799 54062613 Gso9g1964 9 44054786 44057202 GST
Gso13g0439 13 16333510 16336777 Gso18g2108 18 54059799 54062613 PCT
Gso19g0186 19 2278503 2282121 Gso18g2108 18 54059799 54062613 PCT
Gso18g2108 18 54059799 54062613 Gso13g0439 13 16333510 16336777 PCT
Gso18g2108 18 54059799 54062613 Gso19g0186 19 2278503 2282121 PCT