Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2089 ATGGCAGGAAGTGCAAGTAAGGTTACCTTTATCTTCTTGGTTGCTTTTGCCATTTCTATTCCATGCCTTGAGGCGGGCATTGCTGAGTTTGACGATTTTCTGAAAGCACAAGCTGATGAGGCCCATGAGATCGCTCTTCGCTCCTACGAACCTGACCCTATAAACGTTACAGCCGAGTTCAATATCCATGTTCATAGGGCATTAATGGAGGAATCAAACGACACAAGGAGGGAACTAAAGCAGAAATACCGTGGACCATGCTTGGCCACGAACCCAATCGATCGTTGTTGGAGGTGTAGGAAAGATTGGGCACAAGACCGTTATAGGTTAGCCAGTTGTGGCAAGGGTTTCGGAAGAAGGGCCGTGGGAGGACTCCACGGCAAAATCTACGTCGTCACCGATTCCTCCGATGACGAACCCATTAACCCTAGACCCGGGACTCTCAGGTACGGTGTTCTCCAAAGGGAACCACTGTGGATCATATTTGCACAGAGCATGGTGATCACATTGAAGTTCGAGCTGTTGATTTCTTCGGACAAGACCATCGACGGCCGCGGCGCCAACGTGGTGATCAAGGGTGGTGCTGGCCTTGCCATGCAGTTTGTGAACAACATTATTATTCACGGGATTCGCATCAACAAGATCAAGTCCATGGAAGGTACCATGCTTAGGGACCTGTGGAACCACGTTGGAATAAGAACAAGGTGTGATGGGGATGCTGTGTCCATTTTTGGTTCTTCCAACATTTGGCTCGATCATCTTTCGCTGTCTGAATGCGAGGATGGTCTCATTGATATTGTCCAGGGCTCCACTGGAATCACCATCTCAAATTGTCACATGACCAAACATAACGATGTAATGCTGTTTGGAGCTAGCGACACCTACGCCGGTGACAAGATAATGCAGGTTACAGTGGCATTCAACCACTTTGGTCAGGGGCTGATCCAGAGAATGCCAAGGTGCAGATGGGGTTTCGTCCATGTGATAAACAATGACTACACTCACTGGCTGATGTACGCAATCGGTGGCAGCTCAGAGCCAACGATTCTGAGCCAGGGAAACCGGTTCATTGCGCCCAACAACAACGCTGCCAAGGAAATCACACACAGGGACTATGCTCCACCTGAAGAATGGAGCAAATGGCAGTGGAAATCAGAGAACGACCTCTTCATGAATGGGGCTACTTTTCTTCAGTCAGGAGCACCTCTTGGGAAGCTTCCATTCAACAAAGGGCTCATGATGAAACCTAGACCTGGGGCCGAAGCCAACAGGCTCACACGCTTTGCTGGTGCCCTAAATTGCAAGGTGGGTAAGCCTTGCTAG 1323 0.4951 MAGSASKVTFIFLVAFAISIPCLEAGIAEFDDFLKAQADEAHEIALRSYEPDPINVTAEFNIHVHRALMEESNDTRRELKQKYRGPCLATNPIDRCWRCRKDWAQDRYRLASCGKGFGRRAVGGLHGKIYVVTDSSDDEPINPRPGTLRYGVLQREPLWIIFAQSMVITLKFELLISSDKTIDGRGANVVIKGGAGLAMQFVNNIIIHGIRINKIKSMEGTMLRDLWNHVGIRTRCDGDAVSIFGSSNIWLDHLSLSECEDGLIDIVQGSTGITISNCHMTKHNDVMLFGASDTYAGDKIMQVTVAFNHFGQGLIQRMPRCRWGFVHVINNDYTHWLMYAIGGSSEPTILSQGNRFIAPNNNAAKEITHRDYAPPEEWSKWQWKSENDLFMNGATFLQSGAPLGKLPFNKGLMMKPRPGAEANRLTRFAGALNCKVGKPC* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2089 440 PANTHER PECTATE LYASE 5 440 - -
Gso18g2089 440 PANTHER PECTATE LYASE 18-RELATED 5 440 IPR045032 GO:0030570
Gso18g2089 440 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Gso18g2089 440 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Gso18g2089 440 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Gso18g2089 440 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Gso18g2089 440 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Gso18g2089 440 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Gso18g2089 440 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Gso18g2089 440 PRINTS Pollen allergen Amb family signature 411 434 IPR018082 -
Gso18g2089 440 SUPERFAMILY Pectin lyase-like 91 431 IPR011050 -
Gso18g2089 440 Gene3D - 90 433 IPR012334 -
Gso18g2089 440 Pfam Pectate lyase 175 356 IPR002022 -
Gso18g2089 440 SMART amb_all 165 362 IPR002022 -
Gso18g2089 440 Pfam Pectate lyase, N terminus 27 79 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2089 Gso-Chr18 53856853 53860013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2089 6 440 Polysaccharide Lyase AT5G15110 52.137 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2089 K01728 - gmx:100780236 902.123