Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2086 ATGGGGTTTAGGAATAATGCAATTCAGGCTGGGAGTTTGGATGTGGGAAAGTCAAAGGGAAGGATGCAAAAGGATGGTGCTGAGAAGGAAATTGGGTGCTGTGTTAAATTCTGTTTCATTGGGGGCTGTATACCTTCAAGATCAAAGGTGGATAACTCCATAAGTGGCACTAGTGCTAACAGTGTGGAAAAAACATCTGCATCTGAGAAAAGCAAGAAGGAAACAAATGCTCCTCCAGGGTCCTCTACAACAACCAGTAATGCAGAAAGTGTCCCTTCGACTCCAAAATTCAGTGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTTACATTCAATGAGCTTAAGTTGGCCACTAGGAATTTCAGACCGGAGAGTCTTCTTGGCGAGGGAGGGTTTGGTTGTGTGTTCAAGGGTTGGATTGAGGAAAATGGAACTGCACCTGTGAAACCTGGCACTGGGCTTACTGTTGCAGTCAAGACCCTTAACCATGATGGACTGCAGGGTCACAAAGAGTGGCTTGCAGAGTTAGACATTCTCGGTGACCTTGTCCATCCAAATCTGGTCAAATTGGTTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTATGAATGTATGCCCCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCGTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTGCTTTTCTCCATGAAGAAGCTCAAAGACCTGTAATCTATCGTGATTTTAAGACGTCTAATATTCTATTAGATGCGGAATACAATGCCAAGCTCTCTGATTTTGGACTCGCCAAAGATGGTCCTGAAGGGGAAAAGACACACATATCTACCAGAGTCATGGGAACATATGGTTATGCTGCTCCTGAGTATGTCATGACTGGACATTTGACATCAAAAAGTGATGTCTATAGTTTTGGAGTAGTGCTACTTGAAATGCTCACTGGCCGGCGATCTATCGATAAGAATAGACCAAACGGGGAACACAATCTTGTGGAGTGGGCAAGGCCTGTACTTGGGGACCGGAGGATGTTATTACGGATAATTGATCCTCGCCTTGAAGGTCACTTCTCTGTTAAAGGGTCACAGAAGGCTGCGCAGCTTGCTGCTCAATGCCTTAACCGTGATCCAAAATCCAGACCTATGATGAGTGAAGTTGTTCAAGCTCTGAAGCCTTTGCAAAACCTTAAAGATATGGCTATCTCATCTTACCACTTCCAGGTTGCGCGAGTAGATCGTACTATGTCCATGCCTAAAAATGGTATGCAAGCACAGTTAGCATCTTTATCAAGGAAGGGTCAACCAGTGAGGATCTTGTCAAGTCCAAAAGGTCCTCATGGTTCTCCATATCATCACTATATCAAGTCACCGAAACCTAATGGATAA 1425 0.44 MGFRNNAIQAGSLDVGKSKGRMQKDGAEKEIGCCVKFCFIGGCIPSRSKVDNSISGTSANSVEKTSASEKSKKETNAPPGSSTTTSNAESVPSTPKFSEELKVSSRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDLVHPNLVKLVGFCIEDDQRLLVYECMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRMLLRIIDPRLEGHFSVKGSQKAAQLAAQCLNRDPKSRPMMSEVVQALKPLQNLKDMAISSYHFQVARVDRTMSMPKNGMQAQLASLSRKGQPVRILSSPKGPHGSPYHHYIKSPKPNG* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2086 474 SUPERFAMILY Protein kinase-like (PK-like) 96 403 IPR011009 -
Gso18g2086 474 Gene3D Phosphorylase Kinase; domain 1 92 207 - -
Gso18g2086 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Gso18g2086 474 PANTHER RECEPTOR-LIKE KINASE PLANT 57 466 - -
Gso18g2086 474 ProSitePatterns Protein kinases ATP-binding region signature. 128 160 IPR017441 GO:0005524
Gso18g2086 474 PANTHER OS01G0588500 PROTEIN-RELATED 57 466 - -
Gso18g2086 474 Pfam Protein kinase domain 125 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2086 474 Gene3D Transferase(Phosphotransferase) domain 1 208 426 - -
Gso18g2086 474 MobiDBLite consensus disorder prediction 52 97 - -
Gso18g2086 474 CDD STKc_IRAK 128 406 - -
Gso18g2086 474 ProSiteProfiles Protein kinase domain profile. 122 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2086 474 MobiDBLite consensus disorder prediction 437 474 - -
Gso18g2086 474 MobiDBLite consensus disorder prediction 72 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2086 Gso-Chr18 53830980 53835365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2086 80 419 Glycoside Hydrolase AT3G07070 51.705 2.20e-116 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso18g2086 Pkinase 3.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2086 - - gmx:100305393 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2086 18 53830980 53835365 Gso9g1975 9 44166859 44171017 GST
Gso19g0173 19 2131758 2137109 Gso18g2086 18 53830980 53835365 PCT
Gso18g2086 18 53830980 53835365 Gso19g0173 19 2131758 2137109 PCT