Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2078 ATGAAGTTTCTTGTTATTTGCAGTGTTGTTATTATGGGGATAACATTGGAGTTAGAAGCCGTGCCTACACCGTCGCAGCTTCAATTGGAAGAAAATGCTATAATCAATAGTGGATGGTGGAATAGATCAAAGTCAGTAGCTTCACGTAATATCTGTTCATGGTATGGTATGTCTTGCAACGTCGCTGGAAGCATAACTAGAATCAACTATCCCTTTTATACACCTGGGATTCGATTAGCAACACTAAACCTCTCTGCTTTCAAGAATTTAGAATGGCTTGAGGTCTCAAACTGTGGACTACAAGGGACTATCCCATCTGATATTGGTGATCTCCCTAAACTTACTCATCTTGATTTGTCCCATAATTCTCTTCATGGTGAAATACCTCCTTCATTGGCAAATCTTACCCAATTAAAGTCCCTAATCATCTCTCACAACAAATTTCAAGGCCCCATTCCTGGTAAGTTGTTGTTTCTAAAAAATCTTACTGGGTTAAATTTGTCCTATAATTCACTTGATGGTGAGATACCTCCTGTACTGGCAAATCTTACCCAGCTAGAGAACCTAGACCTTTCAAACAACAAATTTCAAGGCCCCATTCCTGGTGAGTTGTTGTTTCTAAAAGATCTTAATTGGTTAGATTTGTCCTATAATTCACTTGATGATGAGATACCTCCTGCACTGGTAAATCTTACCGAGTTAGAGAGACTAGACCTTTCAAACAACAAATTTCAAGGCCCCATTCCAGCGGAGCTTGGACATTTGCTTCTATCTGTGCAAAATGTCAACGTGAACCTTTCATTCAATAATTTGAAGGGTCCCATTCCATATGGTTTAAGTGAGATTCAGCTAATAGGGAACAAGGATGTATGTAGCCATGATTCCTATTACATAGATAAATATCAATTCAAGCGTTGTTCTGCCCAAGACAACAAAGTAAGGCTCAATCAGCAGCTGGTCATAGTTCTCCCTATCCTCATTTTTCTAATCATGCTCTTCTTACTACTCGTGTGTCTGAGGCACACTCGCATTGCAACTAAGAACAAACATGCAAACACAACGGCAGCCACTAAGAATGGGGACTTATTCTGTATATGGAATTATGATGGAAACATAGCCTATGAAGACATCATTAGAGCAACCCAAGACTTTGACATGAGATATTGTATTGGAACAGGTGCCTACGGGAGCGTTTATAGGGCACAATTACCAAGTGGCAAGATTGTTGCCGTGAAAAAACTCCACGGATTTGAAGCAGAGGTGGCAGCTTTTGATGAGAGTTTCATAAATGAGGTCAAAGTATTGTCAGAAATAAAGCATCGACATATTGTGAAGCTCCATGGATTCTGCTTGCACAGAAGAATCATGTTTTTGATATATGAGTACATGGAGAGAGGCAGCTTGTTTTCAGTGTTGTTTGATGATGTGGAAGCCATGGAATTGGATTGGAAAAAGAGGGTTAGCATTGTGAAAGGCACTGCACATGCTCTTTCCTATCTTCATCATGACTTCACTCCTCCAATTGTGCATAGAGACATATCAGCCAGCAATGTCTTGCTTAACTCAGACTGGGAGCCCAGTGTTTCAGACTTTGGCACAGCCCGATTCCTTAGCTCTGATTCATCCCATCGAACTATAGTTGCTGGAACCATTGGGTACATAGCCCCAGAGCTTGCATATAGTATGGTTGTGAGTGAAAGGTGTGATGTGTACAGCTTTGGAGTGGTGGCACTCGAAACTTTGGTGGGATCGCATCCTAAGGAAATATTCTCATCACTTCAATCAGCATCTACTGAGAATGGCATCACATTATGTGAAATATTGGACCAACGCCTCCCACAGGCAACAATGTCAGTTTTAATGGAAATAGTTAGTGTTGCCATAGTTGCATTTGCGTGCTTAAATGCCAATCCTTGCTCTCGCCCAACAATGAAATCGGTCTCTCAATGTTTTCTTACTCAGCTTACACCATTAGACATTCCTTTGCGTGAGATTTCATTGCAGCAGCTCATGAGTCAAGAACTCAGGCATTATTTAAATTTGTGA 2046 0.4076 MKFLVICSVVIMGITLELEAVPTPSQLQLEENAIINSGWWNRSKSVASRNICSWYGMSCNVAGSITRINYPFYTPGIRLATLNLSAFKNLEWLEVSNCGLQGTIPSDIGDLPKLTHLDLSHNSLHGEIPPSLANLTQLKSLIISHNKFQGPIPGKLLFLKNLTGLNLSYNSLDGEIPPVLANLTQLENLDLSNNKFQGPIPGELLFLKDLNWLDLSYNSLDDEIPPALVNLTELERLDLSNNKFQGPIPAELGHLLLSVQNVNVNLSFNNLKGPIPYGLSEIQLIGNKDVCSHDSYYIDKYQFKRCSAQDNKVRLNQQLVIVLPILIFLIMLFLLLVCLRHTRIATKNKHANTTAATKNGDLFCIWNYDGNIAYEDIIRATQDFDMRYCIGTGAYGSVYRAQLPSGKIVAVKKLHGFEAEVAAFDESFINEVKVLSEIKHRHIVKLHGFCLHRRIMFLIYEYMERGSLFSVLFDDVEAMELDWKKRVSIVKGTAHALSYLHHDFTPPIVHRDISASNVLLNSDWEPSVSDFGTARFLSSDSSHRTIVAGTIGYIAPELAYSMVVSERCDVYSFGVVALETLVGSHPKEIFSSLQSASTENGITLCEILDQRLPQATMSVLMEIVSVAIVAFACLNANPCSRPTMKSVSQCFLTQLTPLDIPLREISLQQLMSQELRHYLNL* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2078 681 SMART LRR_typ_2 159 182 IPR003591 -
Gso18g2078 681 SMART LRR_typ_2 183 207 IPR003591 -
Gso18g2078 681 SMART LRR_typ_2 231 255 IPR003591 -
Gso18g2078 681 SMART LRR_typ_2 111 135 IPR003591 -
Gso18g2078 681 Pfam Protein kinase domain 390 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2078 681 PRINTS Leucine-rich repeat signature 114 127 - -
Gso18g2078 681 PRINTS Leucine-rich repeat signature 183 196 - -
Gso18g2078 681 Gene3D Transferase(Phosphotransferase) domain 1 463 657 - -
Gso18g2078 681 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 23 252 - -
Gso18g2078 681 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 231 677 - -
Gso18g2078 681 Gene3D Phosphorylase Kinase; domain 1 343 462 - -
Gso18g2078 681 SUPERFAMILY Protein kinase-like (PK-like) 369 650 IPR011009 -
Gso18g2078 681 ProSiteProfiles Leucine-rich repeat profile. 113 136 IPR001611 GO:0005515
Gso18g2078 681 SUPERFAMILY L domain-like 44 291 - -
Gso18g2078 681 Gene3D Ribonuclease Inhibitor 176 296 IPR032675 -
Gso18g2078 681 Gene3D Ribonuclease Inhibitor 25 175 IPR032675 -
Gso18g2078 681 Pfam Leucine rich repeat 89 148 IPR001611 GO:0005515
Gso18g2078 681 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 231 677 - -
Gso18g2078 681 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 23 252 - -
Gso18g2078 681 ProSitePatterns Tyrosine protein kinases specific active-site signature. 508 520 IPR008266 GO:0004672|GO:0006468
Gso18g2078 681 ProSitePatterns Protein kinases ATP-binding region signature. 390 413 IPR017441 GO:0005524
Gso18g2078 681 Pfam Leucine Rich Repeat 234 255 IPR001611 GO:0005515
Gso18g2078 681 ProSiteProfiles Protein kinase domain profile. 384 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2078 Gso-Chr18 53750273 53752851 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2078 95 556 Receptor kinase-like Gene Family AT4G08850 42.977 2.47e-115 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso18g2078 Pkinase 3.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2078 - - gmx:102665964 1048.11